Jatropha Genome Database

JcCA0246931.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0246931.20 + phase: 0 /TE
         (478 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G21000.1 | Symbols:  | unknown protein | chr3:7363921-7365138...    62   1e-09

>AT3G21000.1 | Symbols:  | unknown protein | chr3:7363921-7365138
           FORWARD
          Length = 405

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 93/205 (45%), Gaps = 16/205 (7%)

Query: 17  NYHVWAVKMRAYFKGLGLWQYVEENRVSLPLNQNPTLQQIRQHEEE------VAKAPKAL 70
           +Y +WA   ++     GLW  V  N V    ++NP L    Q EE       V K  KAL
Sbjct: 16  DYEIWAPITKSTLIEQGLWDVVV-NGVPQDPSKNPELAATIQPEELSKWRDFVVKDAKAL 74

Query: 71  SYIYAAVADPIFTKIMTCETAHEAWEKLKIKYHGYEKT-----RQMQVFNLRKEFEMLKM 125
             + +++ D +F K ++  +A + W+ L+    G E+       Q+ +  L K+ E LKM
Sbjct: 75  QILQSSLTDSVFRKTLSASSAKDVWDLLR---KGNEQATIRRLEQVTIRRLEKQLEDLKM 131

Query: 126 KDNEKVKDYVDRIMKIVNQIRLLGEELEEKGFVEKVMVTLPEKFEAKISSLDDTWDMSQI 185
            D E    Y+D+ ++I+ ++     E  +    + V  TL   F+   S L++  D+ ++
Sbjct: 132 VDKESGSSYLDKALEILERLGRAKLEKSDYEICKNVFTTLSGSFDGLDSMLEELIDVHKM 191

Query: 186 SLNVLSNALQAVEQRKAYREEEIFG 210
           +   L          ++  EE IFG
Sbjct: 192 TSKSLVEYFY-YRVHESSTEEAIFG 215