Jatropha Genome Database

JcCA0246001.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0246001.10 + phase: 1 /pseudo/partial
         (101 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G36280.1 | Symbols:  | adenylosuccinate lyase, putative / ade...    80   2e-16
AT4G18440.1 | Symbols:  | adenylosuccinate lyase, putative / ade...    74   2e-14

>AT1G36280.1 | Symbols:  | adenylosuccinate lyase, putative /
           adenylosuccinase, putative | chr1:13640600-13642908
           FORWARD
          Length = 527

 Score = 80.5 bits (197), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 36/59 (61%), Positives = 47/59 (79%)

Query: 36  KCKYSLLILLFMKMAARDFELSSLTALSPLDGRYWGKVKDLSPHMSEYGLIFYRVLVEV 94
           K   S  ++     ++RDFE+S+LTALSPLDGRYWGKVKDL+  MSE+GLI++RVLVE+
Sbjct: 47  KLMTSTKLIAMASASSRDFEMSNLTALSPLDGRYWGKVKDLASSMSEFGLIYFRVLVEI 105


>AT4G18440.1 | Symbols:  | adenylosuccinate lyase, putative /
           adenylosuccinase, putative | chr4:10186385-10188832
           REVERSE
          Length = 536

 Score = 73.6 bits (179), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/46 (65%), Positives = 41/46 (89%)

Query: 49  MAARDFELSSLTALSPLDGRYWGKVKDLSPHMSEYGLIFYRVLVEV 94
           +++RD E+S+LTALSPLDGRYW KVKDL+  +SE+GLI++RV VE+
Sbjct: 69  VSSRDLEMSNLTALSPLDGRYWSKVKDLASSLSEFGLIYFRVFVEI 114