Jatropha Genome Database

JcCA0245241.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0245241.10 + phase: 0 /partial
         (249 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G52100.1 | Symbols: crr1 | crr1 (chlororespiration reduction ...   405   e-113

>AT5G52100.1 | Symbols: crr1 | crr1 (chlororespiration reduction 1);
           dihydrodipicolinate reductase | chr5:21170203-21172107
           FORWARD
          Length = 298

 Score =  405 bits (1042), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/250 (78%), Positives = 225/250 (90%), Gaps = 4/250 (1%)

Query: 1   MAALSCYFQFTINRSSQKVKSKPFIYCS-TQPVQSNIKVVVNGAAKEIGRAAVIAVSKAR 59
           MAA++C+F F ++R  +   S+P   CS +QP Q+NIKV++NGAAKEIGRAAV+AV+KAR
Sbjct: 1   MAAVNCHF-FQLSRHLKP--SRPSFSCSASQPSQNNIKVIINGAAKEIGRAAVVAVTKAR 57

Query: 60  GMEVAGAVDTHFVGEDIGKLCDMEEPLEIPIINDLTMVLGSISQSKETGVVIDFTDPSTV 119
           GME+AGAVD HFVGEDIG LCDMEEPLEIP+++DLTMVLGSISQ KE GVVIDFTDPSTV
Sbjct: 58  GMELAGAVDNHFVGEDIGLLCDMEEPLEIPVVSDLTMVLGSISQGKEVGVVIDFTDPSTV 117

Query: 120 YDNVKQATAFGMKSIVYVPRIKLDTIAALSALCDKASMGCLVAPTLSIGSILLQQAAISA 179
           Y+NVKQATAFGMKS+VYVPRIK +T++ALSALCDKA+MGCLVAPTLSIGSILLQQA I A
Sbjct: 118 YENVKQATAFGMKSVVYVPRIKPETVSALSALCDKATMGCLVAPTLSIGSILLQQAVIMA 177

Query: 180 SFHYNNVEIVESRAQAADLPSADAFQIAKNLSNLGQIYNREDSSTDVLARGQVLGEDGVR 239
           SFHYNNVE+VESR  AADLPS +A QIA N+SNLGQIYNREDSSTDV ARGQV+GEDGVR
Sbjct: 178 SFHYNNVELVESRPNAADLPSPEAIQIANNISNLGQIYNREDSSTDVQARGQVIGEDGVR 237

Query: 240 VHSLVLPGLP 249
           VHS+VLPGLP
Sbjct: 238 VHSMVLPGLP 247