Jatropha Genome Database

JcCA0241941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0241941.10 + phase: 1 /TE/partial
         (929 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG00810.1 | Symbols: ORF240B | hypothetical protein | chrM:227...    69   1e-11
AT4G23160.1 | Symbols:  | protein kinase family protein | chr4:1...    68   3e-11

>ATMG00810.1 | Symbols: ORF240B | hypothetical protein |
           chrM:227709-228431 REVERSE
          Length = 240

 Score = 69.3 bits (168), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 70/134 (52%), Gaps = 10/134 (7%)

Query: 623 FLLYVVDMLIVGQNSVRINSLKKQLSKSFVLKDLGPAKQILGMKITRDRRAKKLLLSQEK 682
            LLYV D+L+ G ++  +N L  QLS +F +KDLGP    LG++I        L LSQ K
Sbjct: 3   LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQI--KTHPSGLFLSQTK 60

Query: 683 YIVKVLQRFRMGNAKAISCPLTNHFKLSSKQCPSTDGEKEEKEKVLXASAVGNLMYAMVC 742
           Y  ++L    M + K +S PL    KL+S    +   +  +   +     VG L Y +  
Sbjct: 61  YAEQILNNAGMLDCKPMSTPLP--LKLNSSVSTAKYPDPSDFRSI-----VGALQY-LTL 112

Query: 743 TLPDIAHSVGVVSQ 756
           T PDI+++V +V Q
Sbjct: 113 TRPDISYAVNIVCQ 126


>AT4G23160.1 | Symbols:  | protein kinase family protein |
           chr4:12129485-12134086 FORWARD
          Length = 1262

 Score = 68.2 bits (165), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 108/280 (38%), Gaps = 69/280 (24%)

Query: 618 MMTTLFL---LYVVDMLIVGQNSVRINSLKKQLSKSFVLKDLGPAKQILGMKITRDRRAK 674
           +  TLFL   +YV D++I   N   ++ LK QL   F L+DLGP K  LG++I   R A 
Sbjct: 272 ITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIA--RSAA 329

Query: 675 KLLLSQEKYIVKVLQRFRMGNAKAISCPLTNHFKLSSKQCPSTDGEKEEKEKVLXASAVG 734
            + + Q KY + +L    +   K  S P+      S+         K  +        +G
Sbjct: 330 GINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRR------LIG 383

Query: 735 NLMYAMVCTLPDIAHSVGVVSQF------------------------------------L 758
            LMY  +  L DI+ +V  +SQF                                    L
Sbjct: 384 RLMYLQITRL-DISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQL 442

Query: 759 SNLGKEYWTAVKWIFRISNHIC------------RGSRVVAVKITEA--------CKQLL 798
                  + + K   R +N  C            +  +VV+    EA          +++
Sbjct: 443 QVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMM 502

Query: 799 WIKKFLNELGIHQERYR-IFCDSQNAIHLGKNSSFHSITR 837
           W+ +F  EL +   +   +FCD+  AIH+  N+ FH  T+
Sbjct: 503 WLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTK 542