Jatropha Genome Database

JcCA0241461.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0241461.10 + phase: 0 /partial
         (275 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G70980.1 | Symbols: SYNC3 | SYNC3; ATP binding / aminoacyl-tR...   343   9e-95
AT5G56680.1 | Symbols: SYNC1, EMB2755, SYNC1 ARATH | SYNC1; ATP ...   337   3e-93
AT4G17300.1 | Symbols: NS1, OVA8, ATNS1 | NS1; asparagine-tRNA l...   178   3e-45
AT3G07420.1 | Symbols: NS2, ATNS2, SYNC2_ARATH, SYNC2 | NS2; asp...   143   1e-34
AT5G38750.1 | Symbols:  | asparaginyl-tRNA synthetase family | c...    98   6e-21

>AT1G70980.1 | Symbols: SYNC3 | SYNC3; ATP binding / aminoacyl-tRNA
           ligase/ asparagine-tRNA ligase/ aspartate-tRNA ligase/
           nucleic acid binding / nucleotide binding |
           chr1:26762339-26764394 FORWARD
          Length = 571

 Score =  343 bits (879), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 173/271 (63%), Positives = 200/271 (73%), Gaps = 5/271 (1%)

Query: 7   ATALKHPFSDRVPIRSIVNRPDGGTGLCGQRVRIGGWVKTGREQGKGSFAFLELNDGSCS 66
           +T  K  FSDRV IRSI+    GG  L GQ+VRIGGWVKTGR+QGKG+FAFLE+NDGSC 
Sbjct: 22  STVQKAQFSDRVLIRSILG---GGAKLAGQKVRIGGWVKTGRQQGKGTFAFLEVNDGSCP 78

Query: 67  ANLQVIVEKEVADLSPLVHTGACVSVEGVLKEPPEGT--KQKIELRVEKVLHVGPVDPAK 124
           ANLQV+V+  + DLS LV TG CV+V+GVLK PPEG   KQ IEL VE V+ VG VDP  
Sbjct: 79  ANLQVMVDSSLYDLSRLVATGTCVTVDGVLKIPPEGKGLKQSIELSVETVIAVGTVDPTT 138

Query: 125 YPIPKTKLTLEFLRDRIHFRPRTNTISAVARIRNALAFATHSFFQEHGFLYVHTPIITTS 184
           YP+PKTKLT EFLRD +H R RTN ISAVARIRNALAFATHSFFQEH FLY+HTPIITTS
Sbjct: 139 YPLPKTKLTPEFLRDVLHLRSRTNLISAVARIRNALAFATHSFFQEHSFLYIHTPIITTS 198

Query: 185 DCEGAGEMFQVTTXXXXXXXXXXXXXQNPPPSEAEIEAAKLVVKERGEAVAQLXXXXXXX 244
           DCEGAGEMFQVTT              NPPP+EA++EAA+L+VKERGEAVAQL       
Sbjct: 199 DCEGAGEMFQVTTLINHTERVEQDLIDNPPPTEADVEAARLIVKERGEAVAQLKVAKASK 258

Query: 245 XXXXXXXXXLTTAKENVSRLVERSKLKPGIP 275
                    L+ AK +++ + ER +LKPG+P
Sbjct: 259 EEITASVAQLSVAKASLAHVEERLRLKPGLP 289


>AT5G56680.1 | Symbols: SYNC1, EMB2755, SYNC1 ARATH | SYNC1; ATP
           binding / aminoacyl-tRNA ligase/ asparagine-tRNA ligase/
           aspartate-tRNA ligase/ nucleic acid binding / nucleotide
           binding | chr5:22936645-22938841 FORWARD
          Length = 572

 Score =  337 bits (865), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 164/271 (60%), Positives = 201/271 (74%), Gaps = 2/271 (0%)

Query: 7   ATALKHPFSDRVPIRSIVNRPDGGTGLCGQRVRIGGWVKTGREQGKGSFAFLELNDGSCS 66
           +T  +  FS+RV IR+I++RPDGG GL GQ VRIGGWVK+GR+QGK +F+FL +NDGSC 
Sbjct: 22  STVQRAQFSNRVLIRTILDRPDGGAGLAGQTVRIGGWVKSGRDQGKRTFSFLAVNDGSCP 81

Query: 67  ANLQVIVEKEVADLSPLVHTGACVSVEGVLKEPPEG--TKQKIELRVEKVLHVGPVDPAK 124
           ANLQV+V+  + D+S LV TG CV+V+GVLK PP+G  T+Q+IEL V KV+ VG VD +K
Sbjct: 82  ANLQVMVDPSLYDVSNLVATGTCVTVDGVLKVPPKGKGTQQQIELNVVKVIDVGTVDASK 141

Query: 125 YPIPKTKLTLEFLRDRIHFRPRTNTISAVARIRNALAFATHSFFQEHGFLYVHTPIITTS 184
           YP+PKTKLTLE LRD +H R RTN+ISAVARIRNALAFATHSFFQEH FLY+HTPIITTS
Sbjct: 142 YPLPKTKLTLETLRDVLHLRSRTNSISAVARIRNALAFATHSFFQEHSFLYIHTPIITTS 201

Query: 185 DCEGAGEMFQVTTXXXXXXXXXXXXXQNPPPSEAEIEAAKLVVKERGEAVAQLXXXXXXX 244
           DCEGAGEMFQ TT              NPPP+EA++EAA+L+V ERG  VA+L       
Sbjct: 202 DCEGAGEMFQATTLINYTERLEQDLIDNPPPTEADVEAARLIVIERGNVVAELKAAKASK 261

Query: 245 XXXXXXXXXLTTAKENVSRLVERSKLKPGIP 275
                    L  AKE  + + ERS+L+PG+P
Sbjct: 262 EAITAAVAELKIAKETFAHIDERSRLRPGLP 292


>AT4G17300.1 | Symbols: NS1, OVA8, ATNS1 | NS1; asparagine-tRNA
           ligase | chr4:9681558-9684833 FORWARD
          Length = 567

 Score =  178 bits (452), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 93/188 (49%), Positives = 123/188 (65%), Gaps = 8/188 (4%)

Query: 14  FSDRVPIRSIVNRPDGGTGLCGQRVRIGGWVKTGREQGKGSFAFLELNDGSCSANLQVIV 73
           F  ++ I  +    D G    GQ + I GWV+T R Q   S  F+E+NDGSC +NLQ ++
Sbjct: 88  FRKKLRIAEVKGGADEGLSRVGQSLNIMGWVRTLRSQS--SVTFIEINDGSCLSNLQCVM 145

Query: 74  EKEVADLSPL----VHTGACVSVEGVLKEPPEGTKQKIELRVEKVLHVGPVDPAKYPIPK 129
             +      +    + TGA VSV+G +    +GTKQK+EL+VEK++ VG  D + YPI K
Sbjct: 146 TSDAEGYDQVESGSILTGASVSVQGTIV-ASQGTKQKVELKVEKIIVVGECD-SSYPIQK 203

Query: 130 TKLTLEFLRDRIHFRPRTNTISAVARIRNALAFATHSFFQEHGFLYVHTPIITTSDCEGA 189
            +++ EFLR + H RPRTNT  AVAR+RN LA+ATH FFQE GF++V +PIIT SDCEGA
Sbjct: 204 KRVSREFLRTKAHLRPRTNTFGAVARVRNTLAYATHKFFQESGFVWVASPIITASDCEGA 263

Query: 190 GEMFQVTT 197
           GE F VTT
Sbjct: 264 GEQFCVTT 271


>AT3G07420.1 | Symbols: NS2, ATNS2, SYNC2_ARATH, SYNC2 | NS2;
           asparagine-tRNA ligase | chr3:2374179-2376644 REVERSE
          Length = 638

 Score =  143 bits (360), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 86/225 (38%), Positives = 122/225 (54%), Gaps = 12/225 (5%)

Query: 55  FAFLELNDGSCSANLQVIVEKEVADL--SPLVHTGACVSVEGVLKEPPEGT-KQKIELRV 111
           F FL ++DGS  ++LQV+V+  ++ +  + L+  G C+  EGVL+ P   + K  IEL  
Sbjct: 140 FYFL-ISDGSSISSLQVVVDSALSTVPATQLMALGTCIVAEGVLRLPLAASAKHVIELEA 198

Query: 112 EKVLHVGPVDPAKYPIPKTKLTLEFLRDRIHFRPRTNTISAVARIRNALAFATHSFFQEH 171
           EK+LHVG VDP KYP+ K +L L  LRD  HFRPRT T+ +V R+ +AL  A+H+F Q H
Sbjct: 199 EKLLHVGTVDPEKYPLSKKQLPLHMLRDFSHFRPRTTTVGSVTRVHSALTLASHTFLQYH 258

Query: 172 GFLYVHTPIITTSDCEGAGEMFQVTTXXXXXXXXXXXXXQNPPPSEAE---IEAAKLVVK 228
           GF YV  P+ITT+   G GEMF+VTT             + PP  E +   I+  K V+K
Sbjct: 259 GFQYVQVPVITTT--TGFGEMFRVTT---LLGKTDDKEEKKPPVQEKDGFSIDTVKAVIK 313

Query: 229 ERGEAVAQLXXXXXXXXXXXXXXXXLTTAKENVSRLVERSKLKPG 273
           E+   +  L                L    +  S++  + K K G
Sbjct: 314 EKTRLIDHLKRSDSNRETVVAAVHDLKKTNDLASQIEMKQKSKTG 358


>AT5G38750.1 | Symbols:  | asparaginyl-tRNA synthetase family |
           chr5:15522650-15523180 FORWARD
          Length = 135

 Score = 98.2 bits (243), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 65/153 (42%), Positives = 79/153 (51%), Gaps = 45/153 (29%)

Query: 16  DRVPIRSIVNRPDGGTGLCGQRVRIGGWVKTGREQGKGSFAFLELNDGSCSANLQVIVEK 75
            R  IRSI+ RPDG               +  RE GK SF FLE+N GSC+ANLQV    
Sbjct: 15  SRTRIRSILCRPDGS--------------RISRELGK-SFTFLEVNYGSCAANLQV---- 55

Query: 76  EVADLSPLVHTGACVSVEGVLKEPPEG--TKQKIELRVEKVLHVGPVDPAK---YPIPKT 130
                                K P +G  TK+ IEL VEK + VG VD      Y IPK+
Sbjct: 56  ---------------------KIPLQGKATKEMIELNVEKFIDVGTVDHRSETPYSIPKS 94

Query: 131 KLTLEFLRDRIHFRPRTNTISAVARIRNALAFA 163
           KLTLE+LRD  +FR RT+ I+AV RIR+ +  A
Sbjct: 95  KLTLEYLRDHTYFRARTSMIAAVTRIRHKMCLA 127