Jatropha Genome Database

JcCA0240711.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0240711.10 - phase: 0 /partial
         (126 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G04410.1 | Symbols:  | malate dehydrogenase, cytosolic, putat...   228   9e-61
AT5G43330.1 | Symbols:  | malate dehydrogenase, cytosolic, putat...   226   2e-60
AT5G56720.1 | Symbols:  | malate dehydrogenase, cytosolic, putat...   201   8e-53
AT5G58330.1 | Symbols:  | malate dehydrogenase (NADP), chloropla...    92   9e-20
AT5G58330.2 | Symbols:  | malate dehydrogenase (NADP), chloropla...    92   1e-19
AT5G58330.3 | Symbols:  | malate dehydrogenase (NADP), chloropla...    82   9e-17

>AT1G04410.1 | Symbols:  | malate dehydrogenase, cytosolic, putative
           | chr1:1189418-1191267 REVERSE
          Length = 332

 Score =  228 bits (580), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 110/126 (87%), Positives = 118/126 (93%)

Query: 1   MANAPLRVLVTGAAGQIGYAIVPMIARGVMLGPDQPVILHMLDIEPAAEALNGVKMEMID 60
           MA  P+RVLVTGAAGQIGYA+VPMIARG+MLG DQPVILHMLDI PAAEALNGVKME+ID
Sbjct: 1   MAKEPVRVLVTGAAGQIGYALVPMIARGIMLGADQPVILHMLDIPPAAEALNGVKMELID 60

Query: 61  AAFPLLKGVIATTDVVEACMGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH 120
           AAFPLLKGV+ATTD VE C GVNVAVMVGGFPRKEGMERKDVMSKNVSIYK+QA+ALEKH
Sbjct: 61  AAFPLLKGVVATTDAVEGCTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQAAALEKH 120

Query: 121 AAADCK 126
           AA +CK
Sbjct: 121 AAPNCK 126


>AT5G43330.1 | Symbols:  | malate dehydrogenase, cytosolic, putative
           | chr5:17390552-17392449 FORWARD
          Length = 332

 Score =  226 bits (577), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 110/126 (87%), Positives = 118/126 (93%)

Query: 1   MANAPLRVLVTGAAGQIGYAIVPMIARGVMLGPDQPVILHMLDIEPAAEALNGVKMEMID 60
           MA  P+RVLVTGAAGQIGYA+VPMIARG+MLG DQPVILHMLDI  AAEALNGVKME++D
Sbjct: 1   MAKEPVRVLVTGAAGQIGYALVPMIARGIMLGADQPVILHMLDIPFAAEALNGVKMELVD 60

Query: 61  AAFPLLKGVIATTDVVEACMGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH 120
           AAFPLLKGV+ATTD VEAC GVNVAVMVGGFPRKEGMERKDVMSKNVSIYK+QASALEKH
Sbjct: 61  AAFPLLKGVVATTDAVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKH 120

Query: 121 AAADCK 126
           AA +CK
Sbjct: 121 AAPNCK 126


>AT5G56720.1 | Symbols:  | malate dehydrogenase, cytosolic, putative
           | chr5:22945537-22946718 FORWARD
          Length = 339

 Score =  201 bits (512), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 93/122 (76%), Positives = 109/122 (89%)

Query: 5   PLRVLVTGAAGQIGYAIVPMIARGVMLGPDQPVILHMLDIEPAAEALNGVKMEMIDAAFP 64
           P+RVL+TGAAG IGYAI PMIARG+MLGPDQP+ILH+LDIEPA+ +L  VKME+ D+AFP
Sbjct: 11  PIRVLITGAAGNIGYAIAPMIARGIMLGPDQPMILHLLDIEPASSSLEAVKMELQDSAFP 70

Query: 65  LLKGVIATTDVVEACMGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAAD 124
           LLKGVIATT+VVEAC  VN+ +M+GGFPR  GMERKDVMSKNV IYKAQASALE++A+ D
Sbjct: 71  LLKGVIATTNVVEACKDVNIVIMIGGFPRIAGMERKDVMSKNVVIYKAQASALERYASDD 130

Query: 125 CK 126
           CK
Sbjct: 131 CK 132


>AT5G58330.1 | Symbols:  | malate dehydrogenase (NADP), chloroplast,
           putative | chr5:23580010-23582287 REVERSE
          Length = 443

 Score = 91.7 bits (226), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 49/121 (40%), Positives = 71/121 (58%)

Query: 6   LRVLVTGAAGQIGYAIVPMIARGVMLGPDQPVILHMLDIEPAAEALNGVKMEMIDAAFPL 65
           + + V+GAAG I   ++  +A G + GPDQP+ L +L  E + +AL GV ME+ D+ FPL
Sbjct: 100 INIAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSIQALEGVAMELEDSLFPL 159

Query: 66  LKGVIATTDVVEACMGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAADC 125
           L+ V   TD  E    V  A+++G  PR  GMER D++  N  I+  Q  AL K A+ + 
Sbjct: 160 LREVDIGTDPNEVFQDVEWAILIGAKPRGPGMERADLLDINGQIFAEQGKALNKAASPNV 219

Query: 126 K 126
           K
Sbjct: 220 K 220


>AT5G58330.2 | Symbols:  | malate dehydrogenase (NADP), chloroplast,
           putative | chr5:23580010-23582287 REVERSE
          Length = 442

 Score = 91.7 bits (226), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/121 (40%), Positives = 71/121 (58%)

Query: 6   LRVLVTGAAGQIGYAIVPMIARGVMLGPDQPVILHMLDIEPAAEALNGVKMEMIDAAFPL 65
           + + V+GAAG I   ++  +A G + GPDQP+ L +L  E + +AL GV ME+ D+ FPL
Sbjct: 99  INIAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSIQALEGVAMELEDSLFPL 158

Query: 66  LKGVIATTDVVEACMGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAADC 125
           L+ V   TD  E    V  A+++G  PR  GMER D++  N  I+  Q  AL K A+ + 
Sbjct: 159 LREVDIGTDPNEVFQDVEWAILIGAKPRGPGMERADLLDINGQIFAEQGKALNKAASPNV 218

Query: 126 K 126
           K
Sbjct: 219 K 219


>AT5G58330.3 | Symbols:  | malate dehydrogenase (NADP), chloroplast,
           putative | chr5:23580010-23581751 REVERSE
          Length = 334

 Score = 82.0 bits (201), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 43/102 (42%), Positives = 60/102 (58%)

Query: 25  IARGVMLGPDQPVILHMLDIEPAAEALNGVKMEMIDAAFPLLKGVIATTDVVEACMGVNV 84
           +A G + GPDQP+ L +L  E + +AL GV ME+ D+ FPLL+ V   TD  E    V  
Sbjct: 10  LASGEVFGPDQPIALKLLGSERSIQALEGVAMELEDSLFPLLREVDIGTDPNEVFQDVEW 69

Query: 85  AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAADCK 126
           A+++G  PR  GMER D++  N  I+  Q  AL K A+ + K
Sbjct: 70  AILIGAKPRGPGMERADLLDINGQIFAEQGKALNKAASPNVK 111