Jatropha Genome Database

JcCA0240561.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0240561.10 - phase: 1 /partial
         (416 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G16370.1 | Symbols: THY-1 | THY-1 (THYMIDYLATE SYNTHASE 1); d...   585   e-167
AT4G34570.1 | Symbols: THY-2 | THY-2 (thymidylate synthase 2); d...   561   e-160
AT2G21550.1 | Symbols:  | bifunctional dihydrofolate reductase-t...   408   e-114

>AT2G16370.1 | Symbols: THY-1 | THY-1 (THYMIDYLATE SYNTHASE 1);
           dihydrofolate reductase/ thymidylate synthase |
           chr2:7082038-7084333 REVERSE
          Length = 519

 Score =  585 bits (1509), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 274/365 (75%), Positives = 318/365 (87%), Gaps = 4/365 (1%)

Query: 52  TANIQSDPRRTYQVVVAATRDMGIGKEGKLPWRLPSDLKFFKDVTLTTSDSGRKNAVIMG 111
           T  + S+P+RTYQVVVAAT++MGIGK+GKLPW LP+DLKFFKD+TLTTSDS +KNAV+MG
Sbjct: 11  TTTLASEPQRTYQVVVAATKEMGIGKDGKLPWNLPTDLKFFKDITLTTSDSSKKNAVVMG 70

Query: 112 RKTWESIPLEHRPLPGRLNVVLTRSGSFDIATAENVVICGXXXXXXXXXXXXPYCLSIEK 171
           RKTWESIP+++RPL GRLNVVLTRSG FDIA  ENVV C             PYCLSIE+
Sbjct: 71  RKTWESIPIKYRPLSGRLNVVLTRSGGFDIANTENVVTCSSVDSALDLLAAPPYCLSIER 130

Query: 172 VFIIGGGQILRESLNAPGCDAIHITEIETSIDCDTFIPKIDSSVFQPWYSSFPIVENNVR 231
           VF+IGGG ILRE+LN P CDAIH+TEI+TS+DCDTFIP ID+SV+QPW SSFP+ EN +R
Sbjct: 131 VFVIGGGDILREALNRPSCDAIHLTEIDTSVDCDTFIPAIDTSVYQPWSSSFPVTENGLR 190

Query: 232 YCFATYVRVRVSAVESHGQDNGLSSDNSYIKFEVKKFSFLPKMVFERHEEFLYLRLVQDI 291
           +CF T+VRV+ SA ES  + NG  S    ++F+ KKF FLPKMVF++HEEFLYL +V+DI
Sbjct: 191 FCFTTFVRVKSSADESSDESNGSQS----LQFDGKKFLFLPKMVFDQHEEFLYLNMVEDI 246

Query: 292 ISDGNLKDDRTGTGTLSKFGCQMRFNLRRTFPLLTTKKVFWRGVVEELLWFISGSTNCKV 351
           IS+GN+K+DRTGTGTLSKFGCQM+FNLRR+FPLLTTK+VFWRGVVEELLWFISGSTN KV
Sbjct: 247 ISNGNVKNDRTGTGTLSKFGCQMKFNLRRSFPLLTTKRVFWRGVVEELLWFISGSTNAKV 306

Query: 352 LQEKGIHIWDGNASRDYLDGIGLKDREEGDLGPVYGFQWRHFGARYTDMHADYTGQGFDQ 411
           LQEKGIHIWDGNASR+YLDGIGL +REEGDLGPVYGFQWRHFGA+YTDMHADYTGQGFDQ
Sbjct: 307 LQEKGIHIWDGNASREYLDGIGLTEREEGDLGPVYGFQWRHFGAKYTDMHADYTGQGFDQ 366

Query: 412 LLDVI 416
           L+DVI
Sbjct: 367 LVDVI 371


>AT4G34570.1 | Symbols: THY-2 | THY-2 (thymidylate synthase 2);
           dihydrofolate reductase/ thymidylate synthase |
           chr4:16511129-16514110 REVERSE
          Length = 565

 Score =  561 bits (1445), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 279/415 (67%), Positives = 325/415 (78%), Gaps = 13/415 (3%)

Query: 3   FLIALLFQVLKNFCKSWVYTVSSEVPSSNFCLAFFSNMAGDSKASLSNGTANIQSDPRRT 62
           F  ALL    + FCK       S  PSS   L     ++  + A+  NG   + S P+ T
Sbjct: 15  FKSALLPLSQRWFCKF------SPKPSS---LTNIFKVSISTMANTLNGNVIMTSKPQST 65

Query: 63  YQVVVAATRDMGIGKEGKLPWRLPSDLKFFKDVTLTTSDSGRKNAVIMGRKTWESIPLEH 122
           YQVVVAAT++MGIGK+GKLPW LP+DLKFFKD+TL+TSDS +KNAV+MGRKTWESIP ++
Sbjct: 66  YQVVVAATKEMGIGKDGKLPWNLPTDLKFFKDLTLSTSDSAKKNAVVMGRKTWESIPKKY 125

Query: 123 RPLPGRLNVVLTRSGSFDIATAENVVICGXXXXXXXXXXXXPYCLSIEKVFIIGGGQILR 182
           RPL GRLNVVL+RS  FDIA  ENVV C             P+ LSIEKVF+IGGG ILR
Sbjct: 126 RPLSGRLNVVLSRSSGFDIANTENVVTCSSIDSALDLLAAPPFSLSIEKVFVIGGGDILR 185

Query: 183 ESLNAPGCDAIHITEIETSIDCDTFIPKIDSSVFQPWYSSFPIVENNVRYCFATYVRVRV 242
           E+LN P C+AIHITEI+TSIDCDTFIP +D+S +QPW SSFPI EN +R+ F T+VRV+ 
Sbjct: 186 EALNKPSCEAIHITEIDTSIDCDTFIPTVDTSAYQPWCSSFPICENGLRFSFTTHVRVKS 245

Query: 243 SAVESHGQDNGLSSDNSYIKFEVKKFS-FLPKMVFERHEEFLYLRLVQDIISDGNLKDDR 301
           S   S G+ +  S  +  ++ + KKFS  LPKM+F+RHEE+LYL LV++IIS+GNLKDDR
Sbjct: 246 S---SAGEASDESDGSKVLQVDWKKFSSVLPKMIFDRHEEYLYLNLVKEIISNGNLKDDR 302

Query: 302 TGTGTLSKFGCQMRFNLRRTFPLLTTKKVFWRGVVEELLWFISGSTNCKVLQEKGIHIWD 361
           TGTGTLSKFGCQM+FNLRR FPLLTTK+VFWRGVVEELLWFISGSTN KVLQEKGI IWD
Sbjct: 303 TGTGTLSKFGCQMKFNLRRNFPLLTTKRVFWRGVVEELLWFISGSTNAKVLQEKGIRIWD 362

Query: 362 GNASRDYLDGIGLKDREEGDLGPVYGFQWRHFGARYTDMHADYTGQGFDQLLDVI 416
           GNASR YLDGIGL +REEGDLGPVYGFQWRHFGA+YTDMHADYTGQGFDQLLDVI
Sbjct: 363 GNASRAYLDGIGLTEREEGDLGPVYGFQWRHFGAKYTDMHADYTGQGFDQLLDVI 417


>AT2G21550.1 | Symbols:  | bifunctional dihydrofolate
           reductase-thymidylate synthase, putative / DHFR-TS,
           putative | chr2:9227209-9230189 FORWARD
          Length = 492

 Score =  408 bits (1048), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 203/378 (53%), Positives = 261/378 (69%), Gaps = 22/378 (5%)

Query: 40  MAGDSKASLSNGTANIQSDPRRTYQVVVAATRDMGIGKEGKLPWRLPSDLKFFKDVTLTT 99
           MA   +   +NG + +    RR+YQVV+AATRDMG+G + KLPW LPS+ +FF+DVT  T
Sbjct: 1   MASTGETICNNGQSAVSVTRRRSYQVVIAATRDMGLGMDMKLPWDLPSEYQFFQDVTTRT 60

Query: 100 SDSGRKNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIATAENVVICGXXXXXXXX 159
           SD  ++NA IMGRK+WES PLE RPLPGRLN+VLT+S   +IA  ENV++          
Sbjct: 61  SDPTKRNATIMGRKSWESTPLEIRPLPGRLNIVLTKSSCHNIAIDENVLVSSSMESALEL 120

Query: 160 XXXXPYCLSIEKVFIIGGGQILRESLNAPGCDAIHITEIETSIDCDTFIPKIDSSVFQPW 219
               PY LSIEKVF+IGGG++LR  +NA  CDAIH+TEI+ S+ CD F P++D+S+++PW
Sbjct: 121 LATEPYSLSIEKVFVIGGGELLRNYMNASICDAIHLTEIDISVPCDAFAPRVDTSLYRPW 180

Query: 220 YSSFPIVENNVRYCFATYVRVRVSAVESHGQDNGLSSDNSYIKFEVKKFSFLPKMVFERH 279
           YSSFP+VEN +RY F TYVR R  A+   G+   ++        ++K++SFLPKMVFERH
Sbjct: 181 YSSFPVVENGIRYSFNTYVR-RKDAIVGSGEKKSVAES------DLKEYSFLPKMVFERH 233

Query: 280 EEFLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRFNLRRTFPLLTTKKVFWRGVVEEL 339
           EEF YL LVQ+IIS G++ D+     TLSKFGCQMRFNLR+TFPLLTTKK+FW GVVEE+
Sbjct: 234 EEFGYLNLVQNIISSGDMNDN----STLSKFGCQMRFNLRKTFPLLTTKKIFWLGVVEEI 289

Query: 340 LWFISGSTNCKVLQEKGIHIWDGNASRDYLDGIGLKDREE-GDLGPVYGFQWRHFGARYT 398
           L  ISGS N K   E G HIWD + +++YLD  G+   EE GD   ++G  W+H  AR+ 
Sbjct: 290 LQLISGSNNPK---ENGSHIWDTDEAKEYLDSFGVNATEEDGDNPFLHGLHWKHCDARFV 346

Query: 399 DMHADYTGQGFDQLLDVI 416
                   Q F QL DVI
Sbjct: 347 I-------QEFSQLSDVI 357