Jatropha Genome Database

JcCA0238091.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0238091.10 + phase: 2 /partial
         (183 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G21150.1 | Symbols: XCT | XCT (XAP5 CIRCADIAN TIMEKEEPER) | c...   222   1e-58

>AT2G21150.1 | Symbols: XCT | XCT (XAP5 CIRCADIAN TIMEKEEPER) |
           chr2:9065397-9067921 FORWARD
          Length = 337

 Score =  222 bits (565), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 110/159 (69%), Positives = 117/159 (73%)

Query: 25  IKGNSRLSFADDMXXXXXXXXXXXXXXXXXGLVRGKFGKDPTVETSFLPDSXXXXXXXXX 84
           IKG+SRLSFA+D                   L  GK GKDP+VET+FLPDS         
Sbjct: 116 IKGSSRLSFAEDFENGSDEDDGENKSSGTGNLRCGKLGKDPSVETNFLPDSEREAEEQAE 175

Query: 85  XXXXXKQWLHEQEQIRNEPLEITYSYWDGAGHRRVIQARKGDSIGEFLRAVQQQLAPEFR 144
                KQWL EQEQI+NEPLEITYSYWDG GHRRVIQ RKGD IG FLRAVQQQLAP+FR
Sbjct: 176 RERLKKQWLREQEQIKNEPLEITYSYWDGTGHRRVIQVRKGDPIGNFLRAVQQQLAPDFR 235

Query: 145 EIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGP 183
           EIRT SVENLLYVKEDLIIPHQHSFYELI+NKARGKSGP
Sbjct: 236 EIRTASVENLLYVKEDLIIPHQHSFYELIINKARGKSGP 274