Jatropha Genome Database

JcCA0237241.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0237241.10 - phase: 1 /partial
         (222 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G29390.1 | Symbols: RIK | RIK (RS2-Interacting KH protein); R...   142   2e-34

>AT3G29390.1 | Symbols: RIK | RIK (RS2-Interacting KH protein); RNA
           binding | chr3:11289675-11294524 FORWARD
          Length = 578

 Score =  142 bits (358), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/227 (45%), Positives = 118/227 (51%), Gaps = 29/227 (12%)

Query: 3   EAQQPPHLFLSASNPKSLEDAKRLAENLLDTISLECGASRVSSSKVYNAVPPPQQLLAGV 62
           EAQ P HL LS SNPKS++DAKRLAENL+DTIS+E GASRVSSSKVY AVPPPQQL++G 
Sbjct: 249 EAQLPLHLLLSGSNPKSIDDAKRLAENLMDTISVEFGASRVSSSKVYGAVPPPQQLISGA 308

Query: 63  QNSGNENKLNAIPPAGLALS--------AMSSTPPIPATSVKLHVTNSQGTVYQPGGLIN 114
             S  EN+ N I   GL  S        A+SS P  PATS+       Q  V Q  G+ N
Sbjct: 309 PGSDQENQ-NLISTYGLMTSIPITAPPYAVSSFPVTPATSLY-----PQFPVMQSLGISN 362

Query: 115 SXXXXXXXXXXXXXSVXXXXXXXXXXXXXPQATPLQQVALALRQSTSPITSTVAPXXXXX 174
                          V             PQATPLQQVA  L+QS SP+ STV P     
Sbjct: 363 GGPSQP---------VAGGTSYSGYAGIYPQATPLQQVAQVLKQSISPVISTVPPTMLTA 413

Query: 175 XXXXXXXXXXXXXXXXXXGKEKRPTQKRKFQELPIGLKDPAKCHQVS 221
                               E+RP +KRKFQELP   K P K  Q S
Sbjct: 414 TSLSIPSDNASNEM------ERRPPRKRKFQELPADCKVPEKDKQQS 454