Jatropha Genome Database
- JcCA0236591.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0236591.10 + phase: 2 /pseudo/partial
(422 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G16250.1 | Symbols: PHYD | PHYD (PHYTOCHROME DEFECTIVE D); G-... 348 5e-96
AT2G18790.1 | Symbols: PHYB, HY3, OOP1 | PHYB (PHYTOCHROME B); G... 340 8e-94
AT4G18130.1 | Symbols: PHYE | PHYE (PHYTOCHROME DEFECTIVE E); G-... 295 3e-80
AT5G35840.1 | Symbols: PHYC | PHYC (phytochrome defective c); pr... 270 2e-72
AT1G09570.1 | Symbols: PHYA, FHY2, FRE1, HY8 | PHYA (PHYTOCHROME... 249 2e-66
AT1G09570.2 | Symbols: PHYA, FHY2, FRE1, HY8 | PHYA (PHYTOCHROME... 249 2e-66
>AT4G16250.1 | Symbols: PHYD | PHYD (PHYTOCHROME DEFECTIVE D);
G-protein coupled photoreceptor/ red or far-red light
photoreceptor/ signal transducer | chr4:9195602-9199486
REVERSE
Length = 1164
Score = 348 bits (892), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 161/187 (86%), Positives = 174/187 (93%), Gaps = 4/187 (2%)
Query: 240 GDIKLLCDTVVDCVRELTGYDRVMVYKFHEDEHGEVVAENKRSDLEPYIGLHYPATDIPQ 299
GDIKLLCDTVV+ VR+LTGYDRVMVYKFHEDEHGEVVAE+KR+DLEPYIGLHYPATDIPQ
Sbjct: 254 GDIKLLCDTVVESVRDLTGYDRVMVYKFHEDEHGEVVAESKRNDLEPYIGLHYPATDIPQ 313
Query: 300 ASRFLFKQSRVRMIVDCHATPVRIIQDEALMQPLCLVGSTLRAPHGCHAQYMANMGSIAS 359
ASRFLFKQ+RVRMIVDC+A+PVR++QD+ L Q +CLVGSTLRAPHGCHAQYM NMGSIAS
Sbjct: 314 ASRFLFKQNRVRMIVDCYASPVRVVQDDRLTQFICLVGSTLRAPHGCHAQYMTNMGSIAS 373
Query: 360 LAMAVIINGNDEEA----IGGRNLMRLWGLVVCHHTSARSIPFPLRYACEFLMQAFGLQL 415
LAMAVIINGN+E+ GGRN MRLWGLVVCHHTSAR IPFPLRYACEFLMQAFGLQL
Sbjct: 374 LAMAVIINGNEEDGNGVNTGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQL 433
Query: 416 NMELQLA 422
NMELQLA
Sbjct: 434 NMELQLA 440
>AT2G18790.1 | Symbols: PHYB, HY3, OOP1 | PHYB (PHYTOCHROME B);
G-protein coupled photoreceptor/ protein histidine
kinase/ red or far-red light photoreceptor/ signal
transducer | chr2:8140079-8144151 FORWARD
Length = 1172
Score = 340 bits (873), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 157/186 (84%), Positives = 172/186 (92%), Gaps = 3/186 (1%)
Query: 240 GDIKLLCDTVVDCVRELTGYDRVMVYKFHEDEHGEVVAENKRSDLEPYIGLHYPATDIPQ 299
GDIKLLCDTVV+ VR+LTGYDRVMVYKFHEDEHGEVVAE+KR DLEPYIGLHYPATDIPQ
Sbjct: 251 GDIKLLCDTVVESVRDLTGYDRVMVYKFHEDEHGEVVAESKRDDLEPYIGLHYPATDIPQ 310
Query: 300 ASRFLFKQSRVRMIVDCHATPVRIIQDEALMQPLCLVGSTLRAPHGCHAQYMANMGSIAS 359
ASRFLFKQ+RVRMIVDC+ATPV ++QD+ L Q +CLVGSTLRAPHGCH+QYMANMGSIAS
Sbjct: 311 ASRFLFKQNRVRMIVDCNATPVLVVQDDRLTQSMCLVGSTLRAPHGCHSQYMANMGSIAS 370
Query: 360 LAMAVIINGNDEEA---IGGRNLMRLWGLVVCHHTSARSIPFPLRYACEFLMQAFGLQLN 416
LAMAVIINGN+++ GR+ MRLWGLVVCHHTS+R IPFPLRYACEFLMQAFGLQLN
Sbjct: 371 LAMAVIINGNEDDGSNVASGRSSMRLWGLVVCHHTSSRCIPFPLRYACEFLMQAFGLQLN 430
Query: 417 MELQLA 422
MELQLA
Sbjct: 431 MELQLA 436
>AT4G18130.1 | Symbols: PHYE | PHYE (PHYTOCHROME DEFECTIVE E);
G-protein coupled photoreceptor/ protein histidine
kinase/ signal transducer | chr4:10042312-10045948
REVERSE
Length = 1112
Score = 295 bits (756), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 134/183 (73%), Positives = 155/183 (84%), Gaps = 8/183 (4%)
Query: 240 GDIKLLCDTVVDCVRELTGYDRVMVYKFHEDEHGEVVAENKRSDLEPYIGLHYPATDIPQ 299
GDI LCDTVV+ V+ LTGYDRVMVY+FHED+HGEVV+E +RSDLEPY+GLHYPATDIPQ
Sbjct: 216 GDIGALCDTVVEDVQRLTGYDRVMVYQFHEDDHGEVVSEIRRSDLEPYLGLHYPATDIPQ 275
Query: 300 ASRFLFKQSRVRMIVDCHATPVRIIQDEALMQPLCLVGSTLRAPHGCHAQYMANMGSIAS 359
A+RFLFKQ+RVRMI DC+ATPV+++Q E L +PLCLV STLRAPHGCH QYMANMGS+AS
Sbjct: 276 AARFLFKQNRVRMICDCNATPVKVVQSEELKRPLCLVNSTLRAPHGCHTQYMANMGSVAS 335
Query: 360 LAMAVIINGNDEEAIGGRNLMRLWGLVVCHHTSARSIPFPLRYACEFLMQAFGLQLNMEL 419
LA+A+++ G D +LWGLVV HH S R +PFPLRYACEFLMQAFGLQL MEL
Sbjct: 336 LALAIVVKGKDSS--------KLWGLVVGHHCSPRYVPFPLRYACEFLMQAFGLQLQMEL 387
Query: 420 QLA 422
QLA
Sbjct: 388 QLA 390
>AT5G35840.1 | Symbols: PHYC | PHYC (phytochrome defective c);
protein histidine kinase | chr5:14008049-14011619
FORWARD
Length = 1111
Score = 270 bits (689), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 124/186 (66%), Positives = 150/186 (80%), Gaps = 4/186 (2%)
Query: 240 GDIKLLCDTVVDCVRELTGYDRVMVYKFHEDEHGEVVAENKRSDLEPYIGLHYPATDIPQ 299
G++ LLCD +V V ELTGYDRVMVYKFHED HGEV+AE R D+EPY+GLHY ATDIPQ
Sbjct: 212 GNMLLLCDALVKEVSELTGYDRVMVYKFHEDGHGEVIAECCREDMEPYLGLHYSATDIPQ 271
Query: 300 ASRFLFKQSRVRMIVDCHATPVRIIQDEALMQPLCLVGSTLRAPHGCHAQYMANMGSIAS 359
ASRFLF +++VRMI DC A PV+++QD++L QP+ L GSTLRAPHGCHAQYM+NMGS+AS
Sbjct: 272 ASRFLFMRNKVRMICDCSAVPVKVVQDKSLSQPISLSGSTLRAPHGCHAQYMSNMGSVAS 331
Query: 360 LAMAVIINGNDEEAIGGRNLM---RLWGLVVCHHTSARSIPFPLRYACEFLMQAFGLQLN 416
L M+V ING+D + + R+L LWGLVVCHH S R +PFPLRYACEFL Q FG+Q+N
Sbjct: 332 LVMSVTINGSDSDEM-NRDLQTGRHLWGLVVCHHASPRFVPFPLRYACEFLTQVFGVQIN 390
Query: 417 MELQLA 422
E + A
Sbjct: 391 KEAESA 396
>AT1G09570.1 | Symbols: PHYA, FHY2, FRE1, HY8 | PHYA (PHYTOCHROME
A); G-protein coupled photoreceptor/ protein histidine
kinase/ red or far-red light photoreceptor/ signal
transducer | chr1:3095498-3099216 REVERSE
Length = 1122
Score = 249 bits (637), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 117/188 (62%), Positives = 141/188 (75%), Gaps = 6/188 (3%)
Query: 240 GDIKLLCDTVVDCVRELTGYDRVMVYKFHEDEHGEVVAENKRSDLEPYIGLHYPATDIPQ 299
G ++ LCDT+V V ELTGYDRVM YKFHED+HGEVV+E + LEPY+GLHYPATDIPQ
Sbjct: 217 GSMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVVSEVTKPGLEPYLGLHYPATDIPQ 276
Query: 300 ASRFLFKQSRVRMIVDCHATPVRIIQDEALMQPLCLVGSTLRAPHGCHAQYMANMGSIAS 359
A+RFLF +++VRMIVDC+A R++QDE L L L GSTLRAPH CH QYMANM SIAS
Sbjct: 277 AARFLFMKNKVRMIVDCNAKHARVLQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIAS 336
Query: 360 LAMAVIINGNDEEAIG------GRNLMRLWGLVVCHHTSARSIPFPLRYACEFLMQAFGL 413
L MAV++N D E + RLWGLVVCH+T+ R +PFPLRYACEFL Q F +
Sbjct: 337 LVMAVVVNEEDGEGDAPDATTQPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAI 396
Query: 414 QLNMELQL 421
+N E++L
Sbjct: 397 HVNKEVEL 404
>AT1G09570.2 | Symbols: PHYA, FHY2, FRE1, HY8 | PHYA (PHYTOCHROME
A); G-protein coupled photoreceptor/ protein histidine
kinase/ red or far-red light photoreceptor/ signal
transducer | chr1:3095498-3098892 REVERSE
Length = 1014
Score = 249 bits (636), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 117/188 (62%), Positives = 141/188 (75%), Gaps = 6/188 (3%)
Query: 240 GDIKLLCDTVVDCVRELTGYDRVMVYKFHEDEHGEVVAENKRSDLEPYIGLHYPATDIPQ 299
G ++ LCDT+V V ELTGYDRVM YKFHED+HGEVV+E + LEPY+GLHYPATDIPQ
Sbjct: 109 GSMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVVSEVTKPGLEPYLGLHYPATDIPQ 168
Query: 300 ASRFLFKQSRVRMIVDCHATPVRIIQDEALMQPLCLVGSTLRAPHGCHAQYMANMGSIAS 359
A+RFLF +++VRMIVDC+A R++QDE L L L GSTLRAPH CH QYMANM SIAS
Sbjct: 169 AARFLFMKNKVRMIVDCNAKHARVLQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIAS 228
Query: 360 LAMAVIINGNDEEAIG------GRNLMRLWGLVVCHHTSARSIPFPLRYACEFLMQAFGL 413
L MAV++N D E + RLWGLVVCH+T+ R +PFPLRYACEFL Q F +
Sbjct: 229 LVMAVVVNEEDGEGDAPDATTQPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAI 288
Query: 414 QLNMELQL 421
+N E++L
Sbjct: 289 HVNKEVEL 296