Jatropha Genome Database

JcCA0234541.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0234541.10 - phase: 0 /TE/partial
         (406 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G23160.1 | Symbols:  | protein kinase family protein | chr4:1...    50   2e-06

>AT4G23160.1 | Symbols:  | protein kinase family protein |
           chr4:12129485-12134086 FORWARD
          Length = 1262

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 4/89 (4%)

Query: 322 RYIARLIAKDYSQIRCIDFNYIFSHVVKHSSIXXXXXXXXXXXXXXXQLHVKTTFLHGEL 381
           RY ARL+AK Y+Q   IDF   FS V K +S+               QL +   FL+G+L
Sbjct: 145 RYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDL 204

Query: 382 EDKIYIQQSEGFEIEGKE----DHVCLLK 406
           +++IY++   G+     +    + VC LK
Sbjct: 205 DEEIYMKLPPGYAARQGDSLPPNAVCYLK 233