Jatropha Genome Database

JcCA0234331.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0234331.10 + phase: 1 /pseudo/partial
         (154 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G47160.1 | Symbols:  | protein binding / zinc ion binding | c...   130   2e-31
AT5G01520.1 | Symbols:  | zinc finger (C3HC4-type RING finger) f...   121   2e-28
AT5G01520.2 | Symbols:  | zinc finger (C3HC4-type RING finger) f...   117   3e-27
AT5G58787.1 | Symbols:  | zinc finger (C3HC4-type RING finger) f...    96   1e-20
AT5G58787.2 | Symbols:  | zinc finger (C3HC4-type RING finger) f...    75   2e-14
AT1G24440.1 | Symbols:  | protein binding / zinc ion binding | c...    69   8e-13
AT1G13195.1 | Symbols:  | zinc finger (C3HC4-type RING finger) f...    69   9e-13
AT1G13195.2 | Symbols:  | zinc finger (C3HC4-type RING finger) f...    69   1e-12

>AT3G47160.1 | Symbols:  | protein binding / zinc ion binding |
           chr3:17360238-17361879 REVERSE
          Length = 245

 Score =  130 bits (328), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 56/78 (71%), Positives = 69/78 (88%)

Query: 1   VIFPSIMQLQKGITDLEDKKQNEICNIRYKRKDELERGKLSEIDIEREEECGICMEIGSK 60
           VIFPS++QL++GITDL+D+KQ E+C IRY+ KDE E+ KLSEIDIEREEECGICME+ + 
Sbjct: 97  VIFPSLLQLERGITDLDDRKQKEVCKIRYRNKDETEKVKLSEIDIEREEECGICMEMNNM 156

Query: 61  AVLPNCNHSLCLKCFRDW 78
            VLPNC HSLC+KC+RDW
Sbjct: 157 VVLPNCTHSLCIKCYRDW 174


>AT5G01520.1 | Symbols:  | zinc finger (C3HC4-type RING finger)
           family protein | chr5:206797-208399 FORWARD
          Length = 242

 Score =  121 bits (304), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 49/78 (62%), Positives = 68/78 (87%)

Query: 1   VIFPSIMQLQKGITDLEDKKQNEICNIRYKRKDELERGKLSEIDIEREEECGICMEIGSK 60
           V+FPS++QL  GITD+E++KQ EIC+ RY++KD  ++GK+SEID+EREEECGIC+EI +K
Sbjct: 96  VLFPSLLQLHGGITDVEERKQKEICDKRYRKKDRTDKGKMSEIDLEREEECGICLEIRNK 155

Query: 61  AVLPNCNHSLCLKCFRDW 78
            VLP CNHS+C+ C+R+W
Sbjct: 156 VVLPTCNHSMCINCYRNW 173


>AT5G01520.2 | Symbols:  | zinc finger (C3HC4-type RING finger)
           family protein | chr5:206797-208170 FORWARD
          Length = 172

 Score =  117 bits (292), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 48/77 (62%), Positives = 67/77 (87%)

Query: 1   VIFPSIMQLQKGITDLEDKKQNEICNIRYKRKDELERGKLSEIDIEREEECGICMEIGSK 60
           V+FPS++QL  GITD+E++KQ EIC+ RY++KD  ++GK+SEID+EREEECGIC+EI +K
Sbjct: 96  VLFPSLLQLHGGITDVEERKQKEICDKRYRKKDRTDKGKMSEIDLEREEECGICLEIRNK 155

Query: 61  AVLPNCNHSLCLKCFRD 77
            VLP CNHS+C+ C+R+
Sbjct: 156 VVLPTCNHSMCINCYRN 172


>AT5G58787.1 | Symbols:  | zinc finger (C3HC4-type RING finger)
           family protein | chr5:23742733-23744324 FORWARD
          Length = 242

 Score = 95.5 bits (236), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/78 (66%), Positives = 66/78 (84%), Gaps = 3/78 (3%)

Query: 1   VIFPSIMQLQKGITDLEDKKQNEICNIRYKRKDELERGKLSEIDIEREEECGICMEIGSK 60
           VI PS+ QLQ+G+TD++D KQ E+C +RY++KDE E   +SEI+IEREEECGICME+ SK
Sbjct: 97  VILPSLSQLQRGVTDIDDSKQKEVCKMRYRKKDESE---MSEIEIEREEECGICMEMNSK 153

Query: 61  AVLPNCNHSLCLKCFRDW 78
            VLPNC HSLC+KC+RDW
Sbjct: 154 VVLPNCTHSLCIKCYRDW 171


>AT5G58787.2 | Symbols:  | zinc finger (C3HC4-type RING finger)
           family protein | chr5:23742733-23744324 FORWARD
          Length = 227

 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/64 (67%), Positives = 54/64 (84%), Gaps = 3/64 (4%)

Query: 15  DLEDKKQNEICNIRYKRKDELERGKLSEIDIEREEECGICMEIGSKAVLPNCNHSLCLKC 74
           D++D KQ E+C +RY++KDE E   +SEI+IEREEECGICME+ SK VLPNC HSLC+KC
Sbjct: 96  DIDDSKQKEVCKMRYRKKDESE---MSEIEIEREEECGICMEMNSKVVLPNCTHSLCIKC 152

Query: 75  FRDW 78
           +RDW
Sbjct: 153 YRDW 156


>AT1G24440.1 | Symbols:  | protein binding / zinc ion binding |
           chr1:8662340-8663777 FORWARD
          Length = 251

 Score = 69.3 bits (168), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 51/90 (56%), Gaps = 22/90 (24%)

Query: 1   VIFPSIMQLQKGITDLED------------KKQNEICNIRYKRKDELERGKLSEIDIERE 48
           VI PS+ +L     DL D            KKQ +I   RY          ++ ID+ERE
Sbjct: 103 VILPSLERLHINFADLPDESLWYPNPKAITKKQYDIEGSRY----------MNSIDLERE 152

Query: 49  EECGICMEIGSKAVLPNCNHSLCLKCFRDW 78
           +ECGIC+E  +K VLPNC H++C+KC+R+W
Sbjct: 153 DECGICLEPCTKMVLPNCCHAMCIKCYRNW 182


>AT1G13195.1 | Symbols:  | zinc finger (C3HC4-type RING finger)
           family protein | chr1:4501778-4503347 REVERSE
          Length = 260

 Score = 69.3 bits (168), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 1/79 (1%)

Query: 1   VIFPSIMQLQKGITDLEDKKQN-EICNIRYKRKDELERGKLSEIDIEREEECGICMEIGS 59
           VI PS+  L   + +LE      ++  +  K   E    + S   +EREEECGIC+E  +
Sbjct: 111 VILPSLQLLHSNLDELETTDIGFDLKRLSKKITKEARSSRFSNAGLEREEECGICLETCT 170

Query: 60  KAVLPNCNHSLCLKCFRDW 78
           K VLPNC HS+C+KC+R+W
Sbjct: 171 KMVLPNCCHSMCIKCYRNW 189


>AT1G13195.2 | Symbols:  | zinc finger (C3HC4-type RING finger)
           family protein | chr1:4501778-4502855 REVERSE
          Length = 222

 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 1/79 (1%)

Query: 1   VIFPSIMQLQKGITDLEDKKQN-EICNIRYKRKDELERGKLSEIDIEREEECGICMEIGS 59
           VI PS+  L   + +LE      ++  +  K   E    + S   +EREEECGIC+E  +
Sbjct: 73  VILPSLQLLHSNLDELETTDIGFDLKRLSKKITKEARSSRFSNAGLEREEECGICLETCT 132

Query: 60  KAVLPNCNHSLCLKCFRDW 78
           K VLPNC HS+C+KC+R+W
Sbjct: 133 KMVLPNCCHSMCIKCYRNW 151