Jatropha Genome Database

JcCA0233921.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0233921.10 - phase: 0 /pseudo/partial
         (412 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G75660.1 | Symbols: XRN3 | XRN3; 5'-3' exoribonuclease | chr1...   169   3e-42
AT5G42540.1 | Symbols: XRN2 | XRN2 (EXORIBONUCLEASE 2); 5'-3' ex...   110   2e-24
AT1G54490.1 | Symbols: AIN1, EIN5, XRN4, ATXRN4 | XRN4 (EXORIBON...    83   4e-16

>AT1G75660.1 | Symbols: XRN3 | XRN3; 5'-3' exoribonuclease |
           chr1:28408289-28414825 FORWARD
          Length = 1020

 Score =  169 bits (428), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 98/192 (51%), Positives = 118/192 (61%), Gaps = 26/192 (13%)

Query: 45  MNGYISPCSGDTQPPIFRSPVVGMEDILDNEVICAVYRLPDPHKHITRPPAGVIFPKKMV 104
           MNGY++PCSG+T PP+FRSP+ GMEDIL N+VIC +YRLPD H+HITRPP GVIFPKK V
Sbjct: 749 MNGYLTPCSGETHPPVFRSPMEGMEDILTNQVICCIYRLPDAHEHITRPPPGVIFPKKTV 808

Query: 105 NSGDLKPDPVLWHEDSGRRPWESQ--------------RHNPPGTISGRQLGEVSHRLVM 150
           + GDLKP P LWHED+GRRP  +               R NPPG++SGR LG  +HRLV 
Sbjct: 809 DIGDLKPPPALWHEDNGRRPMHNNHGMHNNHGMHNNQGRQNPPGSVSGRHLGNAAHRLVS 868

Query: 151 NSLQLKVDHNGYANHLHIQTSPYAAAP--HVPP----HSSYLNGLHDPGRQRIAQPRTDY 204
           NSLQ+  D   Y     +    Y   P  +VPP    H  Y+     PG Q  AQP   Y
Sbjct: 869 NSLQMGTDR--YQTPTDVPAPGYGYNPPQYVPPIPYQHGGYMA---PPGAQGYAQP-APY 922

Query: 205 SNSGHHRSSNPS 216
            N G ++   PS
Sbjct: 923 QNRGGYQPRGPS 934


>AT5G42540.1 | Symbols: XRN2 | XRN2 (EXORIBONUCLEASE 2); 5'-3'
           exonuclease/ 5'-3' exoribonuclease/ nucleic acid binding
           | chr5:17007513-17014534 FORWARD
          Length = 1012

 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/135 (42%), Positives = 84/135 (62%), Gaps = 13/135 (9%)

Query: 45  MNGYISPCSGDTQPPIFRSPVVGMEDILDNEVICAVYRLPDPHK--HITRPPAGVIFPKK 102
           MNGYI+ C GD+QP  F S V GMED+L N+VICA+Y+LP+  +   IT     +  PKK
Sbjct: 741 MNGYIASCGGDSQPSCFCSTVEGMEDVLTNQVICAIYKLPEDIRGSEITHQIPRLAIPKK 800

Query: 103 MVNSGDLKPDPVLWHEDSGRR-----PWESQRHNPPGTISGRQLGEVSHRLVMNSLQLKV 157
            ++  DLK   +LWHED  +R       + +R+NP G+ISG +LG+ SHRLV+ ++    
Sbjct: 801 TISLVDLKSGGLLWHEDGDKRRAPPKVIKIKRYNPEGSISGGRLGKASHRLVLQTI---- 856

Query: 158 DHNGYANHLHIQTSP 172
             N   ++++I + P
Sbjct: 857 --NAQPDYMNINSEP 869


>AT1G54490.1 | Symbols: AIN1, EIN5, XRN4, ATXRN4 | XRN4
           (EXORIBONUCLEASE 4); 5'-3' exonuclease/ 5'-3'
           exoribonuclease/ nucleic acid binding |
           chr1:20350300-20356650 FORWARD
          Length = 947

 Score = 82.8 bits (203), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/128 (39%), Positives = 65/128 (50%), Gaps = 10/128 (7%)

Query: 45  MNGYISPCSGDTQPPIFRSPVVGMEDILDNEVICAVYRLPDPHKHITRPPAGVIFPKKMV 104
           MNG++     +       SPV G+  I  N  +   Y  P  H HI+ PP G I P K++
Sbjct: 653 MNGFLWFSERNGFQTRVDSPVNGLPCIEQNRALNVTYLCPAKHSHISEPPRGAIIPDKIL 712

Query: 105 NSGDLKPDPVLWHED-SGRRPWESQRHNPPGTISGRQLGEVSHRLVMNSLQLK------- 156
            S D+KP P LWHED S RR     R    G I+G  LGE +HRL+ N+L +K       
Sbjct: 713 TSVDIKPFPPLWHEDNSNRRRQARDRPQVVGAIAGPSLGEAAHRLIKNTLNMKSSTGAAS 772

Query: 157 --VDHNGY 162
             +D NGY
Sbjct: 773 GLIDPNGY 780