Jatropha Genome Database

JcCA0230221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0230221.10 - phase: 0 /partial
         (129 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G61620.2 | Symbols: RRP41 | RRP41; 3'-5'-exoribonuclease/ RNA...   205   5e-54
AT3G61620.1 | Symbols: RRP41 | RRP41; 3'-5'-exoribonuclease/ RNA...   205   5e-54
AT4G27490.1 | Symbols:  | 3' exoribonuclease family domain 1-con...    69   1e-12
AT3G46210.5 | Symbols:  | 3' exoribonuclease family domain 1-con...    54   3e-08
AT3G46210.4 | Symbols:  | 3' exoribonuclease family domain 1-con...    54   3e-08
AT3G46210.3 | Symbols:  | 3' exoribonuclease family domain 1-con...    54   3e-08
AT3G46210.2 | Symbols:  | 3' exoribonuclease family domain 1-con...    54   3e-08
AT3G46210.1 | Symbols:  | 3' exoribonuclease family domain 1-con...    54   3e-08

>AT3G61620.2 | Symbols: RRP41 | RRP41; 3'-5'-exoribonuclease/ RNA
           binding | chr3:22801382-22802910 REVERSE
          Length = 241

 Score =  205 bits (522), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 101/130 (77%), Positives = 115/130 (88%), Gaps = 2/130 (1%)

Query: 1   MDFVSPEGLRLDGRRPMEMRQLRAQIGAVAKADGSAVFEMGNTKVIAAVYGPREVQNRSQ 60
           M++V+PEGLRLDGRR  EMRQ+ A++G V+KADGSAVFEMGNTKVIAAVYGPRE+QN+SQ
Sbjct: 1   MEYVNPEGLRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQ 60

Query: 61  Q-INDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
           Q  ND A+V CEYSMA FSTGDR R+ K DRRSTE+SLVIRQTMEACILT LMP SQIDI
Sbjct: 61  QKKNDHAVVLCEYSMAQFSTGDR-RRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDI 119

Query: 120 YVQVLSADGG 129
           ++QVL ADGG
Sbjct: 120 FLQVLQADGG 129


>AT3G61620.1 | Symbols: RRP41 | RRP41; 3'-5'-exoribonuclease/ RNA
           binding | chr3:22801382-22802910 REVERSE
          Length = 241

 Score =  205 bits (522), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 101/130 (77%), Positives = 115/130 (88%), Gaps = 2/130 (1%)

Query: 1   MDFVSPEGLRLDGRRPMEMRQLRAQIGAVAKADGSAVFEMGNTKVIAAVYGPREVQNRSQ 60
           M++V+PEGLRLDGRR  EMRQ+ A++G V+KADGSAVFEMGNTKVIAAVYGPRE+QN+SQ
Sbjct: 1   MEYVNPEGLRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQ 60

Query: 61  Q-INDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
           Q  ND A+V CEYSMA FSTGDR R+ K DRRSTE+SLVIRQTMEACILT LMP SQIDI
Sbjct: 61  QKKNDHAVVLCEYSMAQFSTGDR-RRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDI 119

Query: 120 YVQVLSADGG 129
           ++QVL ADGG
Sbjct: 120 FLQVLQADGG 129


>AT4G27490.1 | Symbols:  | 3' exoribonuclease family domain
           1-containing protein | chr4:13739961-13741647 FORWARD
          Length = 256

 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 63/119 (52%), Gaps = 5/119 (4%)

Query: 10  RLDGRRPMEMRQLRAQIGAVAKADGSAVFEMGNTKVIAAVYGPREVQNRSQQINDQALVR 69
           R DGR   + R    Q GAV+ A GSA  E GNTKVI +V+GPRE   ++   +D   + 
Sbjct: 34  RPDGRGFHQCRPALLQTGAVSSASGSAYAEFGNTKVIVSVFGPRE-SKKAMVYSDVGRLN 92

Query: 70  CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIYVQVLSADG 128
           C  S  NF++    +    D +  E S ++ + +E  I+    P++ +D++  VL + G
Sbjct: 93  CNVSYTNFASPTLGQGT--DHK--EYSSMLHKALEGVIMMETFPKTTVDVFALVLESGG 147


>AT3G46210.5 | Symbols:  | 3' exoribonuclease family domain
           1-containing protein | chr3:16976960-16978489 REVERSE
          Length = 239

 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 63/123 (51%), Gaps = 18/123 (14%)

Query: 10  RLDGRRPMEMRQLRAQIGAVAKADGSAVFEMGNTKVIAAVYGPREVQNRSQQINDQALVR 69
           R DGR P ++R L      + +  GSA +  G+TKV+AAVYGP+    +++         
Sbjct: 5   REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNEN-------- 56

Query: 70  CEYSMANFSTGDRMRKPKG---DRRSTEISLVIRQTMEA-CILTHLMPRSQIDIYVQVLS 125
                A  +  + + KPK     +   E  +++++T+++ C+LT + P +   + +QV+ 
Sbjct: 57  -----AEKACFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLT-VNPNTTTSVIIQVVH 110

Query: 126 ADG 128
            DG
Sbjct: 111 DDG 113


>AT3G46210.4 | Symbols:  | 3' exoribonuclease family domain
           1-containing protein | chr3:16976960-16978489 REVERSE
          Length = 239

 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 63/123 (51%), Gaps = 18/123 (14%)

Query: 10  RLDGRRPMEMRQLRAQIGAVAKADGSAVFEMGNTKVIAAVYGPREVQNRSQQINDQALVR 69
           R DGR P ++R L      + +  GSA +  G+TKV+AAVYGP+    +++         
Sbjct: 5   REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNEN-------- 56

Query: 70  CEYSMANFSTGDRMRKPKG---DRRSTEISLVIRQTMEA-CILTHLMPRSQIDIYVQVLS 125
                A  +  + + KPK     +   E  +++++T+++ C+LT + P +   + +QV+ 
Sbjct: 57  -----AEKACFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLT-VNPNTTTSVIIQVVH 110

Query: 126 ADG 128
            DG
Sbjct: 111 DDG 113


>AT3G46210.3 | Symbols:  | 3' exoribonuclease family domain
           1-containing protein | chr3:16976960-16978489 REVERSE
          Length = 239

 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 63/123 (51%), Gaps = 18/123 (14%)

Query: 10  RLDGRRPMEMRQLRAQIGAVAKADGSAVFEMGNTKVIAAVYGPREVQNRSQQINDQALVR 69
           R DGR P ++R L      + +  GSA +  G+TKV+AAVYGP+    +++         
Sbjct: 5   REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNEN-------- 56

Query: 70  CEYSMANFSTGDRMRKPKG---DRRSTEISLVIRQTMEA-CILTHLMPRSQIDIYVQVLS 125
                A  +  + + KPK     +   E  +++++T+++ C+LT + P +   + +QV+ 
Sbjct: 57  -----AEKACFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLT-VNPNTTTSVIIQVVH 110

Query: 126 ADG 128
            DG
Sbjct: 111 DDG 113


>AT3G46210.2 | Symbols:  | 3' exoribonuclease family domain
           1-containing protein | chr3:16976960-16978489 REVERSE
          Length = 239

 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 63/123 (51%), Gaps = 18/123 (14%)

Query: 10  RLDGRRPMEMRQLRAQIGAVAKADGSAVFEMGNTKVIAAVYGPREVQNRSQQINDQALVR 69
           R DGR P ++R L      + +  GSA +  G+TKV+AAVYGP+    +++         
Sbjct: 5   REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNEN-------- 56

Query: 70  CEYSMANFSTGDRMRKPKG---DRRSTEISLVIRQTMEA-CILTHLMPRSQIDIYVQVLS 125
                A  +  + + KPK     +   E  +++++T+++ C+LT + P +   + +QV+ 
Sbjct: 57  -----AEKACFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLT-VNPNTTTSVIIQVVH 110

Query: 126 ADG 128
            DG
Sbjct: 111 DDG 113


>AT3G46210.1 | Symbols:  | 3' exoribonuclease family domain
           1-containing protein | chr3:16976960-16978489 REVERSE
          Length = 239

 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 63/123 (51%), Gaps = 18/123 (14%)

Query: 10  RLDGRRPMEMRQLRAQIGAVAKADGSAVFEMGNTKVIAAVYGPREVQNRSQQINDQALVR 69
           R DGR P ++R L      + +  GSA +  G+TKV+AAVYGP+    +++         
Sbjct: 5   REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNEN-------- 56

Query: 70  CEYSMANFSTGDRMRKPKG---DRRSTEISLVIRQTMEA-CILTHLMPRSQIDIYVQVLS 125
                A  +  + + KPK     +   E  +++++T+++ C+LT + P +   + +QV+ 
Sbjct: 57  -----AEKACFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLT-VNPNTTTSVIIQVVH 110

Query: 126 ADG 128
            DG
Sbjct: 111 DDG 113