Jatropha Genome Database

JcCA0229911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0229911.10 + phase: 0 /partial
         (185 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G42120.1 | Symbols: POLD2 | POLD2 (DNA POLYMERASE DELTA SMALL...   318   1e-87
AT2G42120.2 | Symbols: POLD2 | POLD2 (DNA POLYMERASE DELTA SMALL...   318   1e-87

>AT2G42120.1 | Symbols: POLD2 | POLD2 (DNA POLYMERASE DELTA SMALL
           SUBUNIT); DNA binding / DNA-directed DNA polymerase |
           chr2:17563282-17565965 REVERSE
          Length = 441

 Score =  318 bits (815), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 146/181 (80%), Positives = 163/181 (90%)

Query: 5   QNLAPKDQSRLSEPVKELDIFLSQIAAGVPLDIMPGPNDPANFSLPQQSLHRCLFPGSAT 64
           QNLA KDQS L EP+KELDI LSQIAAGV +DIMPG NDPANF+LPQQ L+RCLFPGS+ 
Sbjct: 244 QNLASKDQSTLYEPIKELDIMLSQIAAGVSVDIMPGTNDPANFALPQQPLNRCLFPGSSP 303

Query: 65  YNTFRSCTNPHCFELDNIRFLGTSGQNIDDLEKYSEAKDKLEFLERTLKWRHLAPTAPNT 124
           YNTFRSCTNPH F++DNIRFLGTSGQNIDDL KYSEAK KL+F+ERTL+WRHLAPTAPNT
Sbjct: 304 YNTFRSCTNPHSFDVDNIRFLGTSGQNIDDLGKYSEAKSKLDFVERTLRWRHLAPTAPNT 363

Query: 125 LGCYPFTDRDPFLIESCPHVYFVANQDKYGTRMLKGPEGQLIRLISIPKFSETGVAVMVS 184
           LGCYPFTDRDPFLIE+CPHVYFV NQDKY  R++KG EGQL+RLI IPKF ETG+AV V+
Sbjct: 364 LGCYPFTDRDPFLIETCPHVYFVGNQDKYDNRLIKGSEGQLVRLICIPKFCETGIAVAVN 423

Query: 185 I 185
           +
Sbjct: 424 L 424


>AT2G42120.2 | Symbols: POLD2 | POLD2 (DNA POLYMERASE DELTA SMALL
           SUBUNIT); DNA binding / DNA-directed DNA polymerase |
           chr2:17563282-17565965 REVERSE
          Length = 440

 Score =  318 bits (815), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 146/181 (80%), Positives = 163/181 (90%)

Query: 5   QNLAPKDQSRLSEPVKELDIFLSQIAAGVPLDIMPGPNDPANFSLPQQSLHRCLFPGSAT 64
           QNLA KDQS L EP+KELDI LSQIAAGV +DIMPG NDPANF+LPQQ L+RCLFPGS+ 
Sbjct: 243 QNLASKDQSTLYEPIKELDIMLSQIAAGVSVDIMPGTNDPANFALPQQPLNRCLFPGSSP 302

Query: 65  YNTFRSCTNPHCFELDNIRFLGTSGQNIDDLEKYSEAKDKLEFLERTLKWRHLAPTAPNT 124
           YNTFRSCTNPH F++DNIRFLGTSGQNIDDL KYSEAK KL+F+ERTL+WRHLAPTAPNT
Sbjct: 303 YNTFRSCTNPHSFDVDNIRFLGTSGQNIDDLGKYSEAKSKLDFVERTLRWRHLAPTAPNT 362

Query: 125 LGCYPFTDRDPFLIESCPHVYFVANQDKYGTRMLKGPEGQLIRLISIPKFSETGVAVMVS 184
           LGCYPFTDRDPFLIE+CPHVYFV NQDKY  R++KG EGQL+RLI IPKF ETG+AV V+
Sbjct: 363 LGCYPFTDRDPFLIETCPHVYFVGNQDKYDNRLIKGSEGQLVRLICIPKFCETGIAVAVN 422

Query: 185 I 185
           +
Sbjct: 423 L 423