Jatropha Genome Database
- JcCA0225811.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0225811.10 + phase: 0 /partial
(147 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G15960.1 | Symbols: NRAMP6, ATNRAMP6 | NRAMP6; inorganic anio... 199 6e-52
AT1G80830.1 | Symbols: NRAMP1, PMIT1, ATNRAMP1 | NRAMP1 (NATURAL... 199 7e-52
AT5G67330.1 | Symbols: ATNRAMP4, NRAMP4 | ATNRAMP4; inorganic an... 136 5e-33
AT2G23150.1 | Symbols: NRAMP3, ATNRAMP3 | NRAMP3 (NATURAL RESIST... 131 2e-31
AT1G47240.1 | Symbols: NRAMP2, ATNRAMP2 | NRAMP2; inorganic anio... 129 6e-31
AT4G18790.1 | Symbols: NRAMP5, ATNRAMP5 | NRAMP5; inorganic anio... 121 2e-28
AT5G03280.1 | Symbols: EIN2, PIR2, CKR1, ERA3, ORE3, ORE2, ATEIN... 74 4e-14
>AT1G15960.1 | Symbols: NRAMP6, ATNRAMP6 | NRAMP6; inorganic anion
transmembrane transporter/ metal ion transmembrane
transporter | chr1:5482202-5485066 REVERSE
Length = 527
Score = 199 bits (505), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 96/147 (65%), Positives = 119/147 (80%)
Query: 1 MQAGANHGYELLWVILIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPKYVKLCLWLLA 60
+Q+GA + YELLW+IL+ AL+IQSLAANLGV TGKHL+E C+AEY K LW++A
Sbjct: 62 LQSGAQYKYELLWIILVASCAALVIQSLAANLGVVTGKHLAEHCRAEYSKVPNFMLWVVA 121
Query: 61 EVAVIAADIPEVIGTAFALNILFNIPVWVGVLITGCSTLLLLGLQRYGVRKLELLIAILV 120
E+AV+A DIPEVIGTAFALN+LFNIPVW+GVL+TG STL+LL LQ+YG+RKLE LIA LV
Sbjct: 122 EIAVVACDIPEVIGTAFALNMLFNIPVWIGVLLTGLSTLILLALQQYGIRKLEFLIAFLV 181
Query: 121 FIMAGCFFGEMSYVKPPAVEVIKGMFI 147
F +A CFF E+ Y KP EV+ G+F+
Sbjct: 182 FTIALCFFVELHYSKPDPKEVLYGLFV 208
>AT1G80830.1 | Symbols: NRAMP1, PMIT1, ATNRAMP1 | NRAMP1 (NATURAL
RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 1); inorganic
anion transmembrane transporter/ manganese ion
transmembrane transporter/ metal ion transmembrane
transporter | chr1:30373066-30375644 REVERSE
Length = 532
Score = 199 bits (505), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 97/147 (65%), Positives = 120/147 (81%)
Query: 1 MQAGANHGYELLWVILIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPKYVKLCLWLLA 60
+QAGA++ YELLW+IL+ AL+IQSLAANLGV TGKHL+E C+AEY K LW++A
Sbjct: 70 LQAGAHYKYELLWIILVASCAALVIQSLAANLGVVTGKHLAEQCRAEYSKVPNFMLWVVA 129
Query: 61 EVAVIAADIPEVIGTAFALNILFNIPVWVGVLITGCSTLLLLGLQRYGVRKLELLIAILV 120
E+AV+A DIPEVIGTAFALN+LF+IPVW+GVL+TG STL+LL LQ+YGVRKLE LIA LV
Sbjct: 130 EIAVVACDIPEVIGTAFALNMLFSIPVWIGVLLTGLSTLILLALQKYGVRKLEFLIAFLV 189
Query: 121 FIMAGCFFGEMSYVKPPAVEVIKGMFI 147
F +A CFF E+ Y KP EV+ G+F+
Sbjct: 190 FTIAICFFVELHYSKPDPGEVLHGLFV 216
>AT5G67330.1 | Symbols: ATNRAMP4, NRAMP4 | ATNRAMP4; inorganic anion
transmembrane transporter/ manganese ion transmembrane
transporter/ metal ion transmembrane transporter |
chr5:26861822-26863580 FORWARD
Length = 512
Score = 136 bits (342), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 99/149 (66%), Gaps = 2/149 (1%)
Query: 1 MQAGANHGYELLWVILIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPKYVKLCLWLLA 60
+QAGA GY L+W+++ L+IQ L+A LGV+TG+HL+ELC+ EYP + ++ LW++A
Sbjct: 76 LQAGAIAGYSLIWLLMWATAIGLLIQLLSARLGVATGRHLAELCREEYPTWARMVLWIMA 135
Query: 61 EVAVIAADIPEVIGTAFALNILFN--IPVWVGVLITGCSTLLLLGLQRYGVRKLELLIAI 118
E+A+I ADI EVIG+A A+ IL N +P+W GV+IT + L L+ YG+RKLE + AI
Sbjct: 136 EIALIGADIQEVIGSAIAIKILSNGLVPLWAGVVITALDCFIFLFLENYGIRKLEAVFAI 195
Query: 119 LVFIMAGCFFGEMSYVKPPAVEVIKGMFI 147
L+ MA F KP E++ G +
Sbjct: 196 LIATMALAFAWMFGQTKPSGTELLVGALV 224
>AT2G23150.1 | Symbols: NRAMP3, ATNRAMP3 | NRAMP3 (NATURAL
RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3); inorganic
anion transmembrane transporter/ manganese ion
transmembrane transporter/ metal ion transmembrane
transporter | chr2:9856422-9858565 REVERSE
Length = 509
Score = 131 bits (329), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 99/149 (66%), Gaps = 2/149 (1%)
Query: 1 MQAGANHGYELLWVILIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPKYVKLCLWLLA 60
+QAGA GY LLW+++ L++Q L+A LGV+TG+HL+ELC+ EYP + ++ LW++A
Sbjct: 80 LQAGAVAGYSLLWLLMWATAMGLLVQLLSARLGVATGRHLAELCRDEYPTWARMVLWVMA 139
Query: 61 EVAVIAADIPEVIGTAFALNILFN--IPVWVGVLITGCSTLLLLGLQRYGVRKLELLIAI 118
E+A+I +DI EVIG+A A+ IL N +P+W GV+IT + L L+ YG+RKLE + A+
Sbjct: 140 ELALIGSDIQEVIGSAIAIKILSNGILPLWAGVVITALDCFVFLFLENYGIRKLEAVFAV 199
Query: 119 LVFIMAGCFFGEMSYVKPPAVEVIKGMFI 147
L+ M F KP E++ G+ +
Sbjct: 200 LIATMGVSFAWMFGQAKPSGSELLIGILV 228
>AT1G47240.1 | Symbols: NRAMP2, ATNRAMP2 | NRAMP2; inorganic anion
transmembrane transporter/ metal ion transmembrane
transporter | chr1:17309043-17311308 REVERSE
Length = 530
Score = 129 bits (324), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 70/152 (46%), Positives = 99/152 (65%), Gaps = 8/152 (5%)
Query: 1 MQAGANHGYELLWVILIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPKYVKLCLWLLA 60
+QAGA GY LLW+++ L+IQ L+A +GV+TG+HL+ELC+ EYP + + LW +A
Sbjct: 92 LQAGAIAGYSLLWLLMWATAMGLLIQMLSARVGVATGRHLAELCRDEYPTWARYVLWSMA 151
Query: 61 EVAVIAADIPEVIGTAFALNILFN--IPVWVGVLITGCSTLLLLGLQRYGVRKLELLIAI 118
E+A+I ADI EVIG+A A+ IL +P+W GV+IT L L L+ YGVRKLE + A+
Sbjct: 152 ELALIGADIQEVIGSAIAIQILSRGFLPLWAGVVITASDCFLFLFLENYGVRKLEAVFAV 211
Query: 119 LVFIMAGCF---FGEMSYVKPPAVEVIKGMFI 147
L+ M F FGE KP E++ G+ +
Sbjct: 212 LIATMGLSFAWMFGE---TKPSGKELMIGILL 240
>AT4G18790.1 | Symbols: NRAMP5, ATNRAMP5 | NRAMP5; inorganic anion
transmembrane transporter/ metal ion transmembrane
transporter | chr4:10317785-10319660 REVERSE
Length = 530
Score = 121 bits (303), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 101/149 (67%), Gaps = 2/149 (1%)
Query: 1 MQAGANHGYELLWVILIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPKYVKLCLWLLA 60
+QAGA GY LLW++L + L++Q L+A +GV+TG+HL+E+C++EYP + ++ LW +A
Sbjct: 94 LQAGAVAGYSLLWLLLWATLMGLLMQLLSARIGVATGRHLAEICRSEYPSWARILLWFMA 153
Query: 61 EVAVIAADIPEVIGTAFALNILFN--IPVWVGVLITGCSTLLLLGLQRYGVRKLELLIAI 118
EVA+I ADI EVIG+A AL IL +P+WVGV+IT L+ L++ G+RKLE L A+
Sbjct: 154 EVALIGADIQEVIGSAIALQILTRGFLPIWVGVIITSFDCFLISYLEKCGMRKLEGLFAV 213
Query: 119 LVFIMAGCFFGEMSYVKPPAVEVIKGMFI 147
L+ MA F + KP E+ G+ I
Sbjct: 214 LIATMALSFAWMFNETKPSVEELFIGIII 242
>AT5G03280.1 | Symbols: EIN2, PIR2, CKR1, ERA3, ORE3, ORE2, ATEIN2 |
EIN2 (ETHYLENE INSENSITIVE 2); transporter |
chr5:788589-793066 FORWARD
Length = 1294
Score = 73.6 bits (179), Expect = 4e-14, Method: Composition-based stats.
Identities = 36/101 (35%), Positives = 59/101 (58%)
Query: 1 MQAGANHGYELLWVILIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPKYVKLCLWLLA 60
++ GA GY+L+ + L+ A++ Q +AA + V TGKHL+++C EY K+ + L + A
Sbjct: 42 IEGGARFGYDLVAITLLFNFAAILCQYVAARISVVTGKHLAQICNEEYDKWTCMFLGIQA 101
Query: 61 EVAVIAADIPEVIGTAFALNILFNIPVWVGVLITGCSTLLL 101
E + I D+ V+G A ALN+LF + + GV + L
Sbjct: 102 EFSAILLDLTMVVGVAHALNLLFGVELSTGVFLAAMDAFLF 142