Jatropha Genome Database

JcCA0224551.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0224551.10 + phase: 0 
         (106 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G62140.1 | Symbols:  | unknown protein | chr3:23007277-230086...   164   1e-41

>AT3G62140.1 | Symbols:  | unknown protein | chr3:23007277-23008626
           FORWARD
          Length = 214

 Score =  164 bits (415), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 80/104 (76%), Positives = 95/104 (91%)

Query: 1   MAEESPRAMRLMNFISEEQLDEAKKTRGERVDDGTAQRDRPLYEILKENKDKRDAEFNER 60
           M +E+ + +RL+NF+SEEQLDE+KK RGERV+DGT QRDR LYEILKENKDK+DAEFNER
Sbjct: 1   MVDETEKPIRLLNFVSEEQLDESKKERGERVEDGTFQRDRALYEILKENKDKKDAEFNER 60

Query: 61  FKHRPPKALDEDETEFLEKLEMSRREYEQQMAVDEAEQLRSFQV 104
           FKHRPPKALDEDETEFL+KLEMS+REYE+Q+A +E EQLR+FQ 
Sbjct: 61  FKHRPPKALDEDETEFLDKLEMSKREYERQLANEEDEQLRNFQA 104