Jatropha Genome Database

JcCA0224481.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0224481.10 - phase: 1 /pseudo/partial
         (333 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G03090.1 | Symbols:  | sequence-specific DNA binding / transc...   308   4e-84

>AT4G03090.1 | Symbols:  | sequence-specific DNA binding /
           transcription factor | chr4:1366495-1370937 REVERSE
          Length = 913

 Score =  308 bits (788), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 157/301 (52%), Positives = 205/301 (68%), Gaps = 9/301 (2%)

Query: 20  CQQCEASLQFLQSLCQQKLFRERLLRNKELCGKGGVLFLAHGILKLKITAPFVESSTVVA 79
           CQQ EA+LQFL SLCQ K FRER+ +NKELCGKGGVL LA  IL L IT  FV ++  +A
Sbjct: 217 CQQAEAALQFLHSLCQHKPFRERVAKNKELCGKGGVLRLAQSILSLTITPEFVGATVTIA 276

Query: 80  AVSRLKAKVLSILLHLCEAESISYLDEVASSPGSLDXXXXXXXXXXXXXXXXXXKDPKHL 139
           + SR+KAKVLSIL HL EAES+S+LDEVA++ G+L                   K     
Sbjct: 277 STSRMKAKVLSILQHLFEAESVSFLDEVANA-GNLHLAKTVASEVLKLLRLGLSKASM-- 333

Query: 140 SACSERTFPMGLLRLNAMRLADIFSDDSNFRSYITTCFTKVLTAIFSLPHGEFLSIWCSS 199
            A +   +PMG + LNAMRLAD+ +DDSNFRS+ T  F+ VL+A+F L HG+FLS+ CSS
Sbjct: 334 -ATASPDYPMGFVLLNAMRLADVLTDDSNFRSFFTEHFSMVLSAVFCLSHGDFLSMLCSS 392

Query: 200 ELPPREEDATLEYDVFTAAGWFLDTFSSLDQSSAINLEITLIPSNMPQATYAHQRTSLFV 259
           +L  RE+DA ++YD+F +AGW L  FSS  QS     +++L  +N+  ++YAHQRTSLF+
Sbjct: 393 DLSSREDDANVDYDLFKSAGWILSVFSSSGQSVTPQFKLSL-QNNLTMSSYAHQRTSLFI 451

Query: 260 KVIANLHCFVPNICEEQERNLFLHKFCECMRMNPS----ESLPGFSFTSGANKAITVCRN 315
           K+IANLHCFVPN+C+EQ+RN F+      +R +PS    + LPG S+T  A +   VCRN
Sbjct: 452 KMIANLHCFVPNVCQEQDRNRFIQNVMSGLRKDPSSILIKMLPGSSYTPVAQRGTGVCRN 511

Query: 316 L 316
           L
Sbjct: 512 L 512