Jatropha Genome Database

JcCA0224291.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0224291.10 + phase: 0 /partial
         (71 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G27740.1 | Symbols: EMB2775 | EMB2775 (EMBRYO DEFECTIVE 2775)...   140   2e-34
AT1G77470.1 | Symbols:  | replication factor C 36 kDA, putative ...    74   2e-14
AT1G21690.1 | Symbols: emb1968 | emb1968 (embryo defective 1968)...    70   3e-13
AT1G21690.2 | Symbols: emb1968 | emb1968 (embryo defective 1968)...    60   3e-10
AT1G63160.1 | Symbols:  | replication factor C 40 kDa, putative ...    55   9e-09

>AT5G27740.1 | Symbols: EMB2775 | EMB2775 (EMBRYO DEFECTIVE 2775);
          DNA binding / nucleoside-triphosphatase/ nucleotide
          binding | chr5:9823831-9826869 FORWARD
          Length = 354

 Score =  140 bits (352), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 64/71 (90%), Positives = 69/71 (97%)

Query: 1  MLWVDKYRPKTLDQVIAHEDIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQIFG 60
          MLWVDKYRPK+LD+VI HEDIAQ LKKLV+EQDCPHLLFYGPSGSGKKTLIMALL+QI+G
Sbjct: 1  MLWVDKYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLKQIYG 60

Query: 61 ASAEKVKVENR 71
          ASAEKVKVENR
Sbjct: 61 ASAEKVKVENR 71


>AT1G77470.1 | Symbols:  | replication factor C 36 kDA, putative |
          chr1:29112194-29114323 REVERSE
          Length = 369

 Score = 74.3 bits (181), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 41/58 (70%)

Query: 3  WVDKYRPKTLDQVIAHEDIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQIFG 60
          WV+KYRP++LD V AH DI   + +L  E   PHLL YGP G+GK + I+A+ R+++G
Sbjct: 41 WVEKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGTGKTSTILAVARKLYG 98


>AT1G21690.1 | Symbols: emb1968 | emb1968 (embryo defective 1968);
          ATP binding / ATPase/ DNA binding / DNA clamp loader/
          nucleoside-triphosphatase/ nucleotide binding |
          chr1:7615675-7618362 FORWARD
          Length = 339

 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 41/66 (62%)

Query: 3  WVDKYRPKTLDQVIAHEDIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQIFGAS 62
          WV+KYRPK +  V   E++ + L   +   DCPH+LFYGP G+GK T  +A+  Q+FG  
Sbjct: 11 WVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70

Query: 63 AEKVKV 68
            K +V
Sbjct: 71 LYKSRV 76


>AT1G21690.2 | Symbols: emb1968 | emb1968 (embryo defective 1968);
          ATP binding / ATPase/ DNA binding / DNA clamp loader/
          nucleoside-triphosphatase/ nucleotide binding |
          chr1:7615675-7618362 FORWARD
          Length = 327

 Score = 59.7 bits (143), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 12/66 (18%)

Query: 3  WVDKYRPKTLDQVIAHEDIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQIFGAS 62
          WV+KYRPK +  V AH+           E+ CPH+LFYGP G+GK T  +A+  Q+FG  
Sbjct: 11 WVEKYRPKQVKDV-AHQ-----------EEVCPHMLFYGPPGTGKTTTALAIAHQLFGPE 58

Query: 63 AEKVKV 68
            K +V
Sbjct: 59 LYKSRV 64


>AT1G63160.1 | Symbols:  | replication factor C 40 kDa, putative |
          chr1:23422068-23423771 REVERSE
          Length = 333

 Score = 55.1 bits (131), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 41/67 (61%)

Query: 3  WVDKYRPKTLDQVIAHEDIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQIFGAS 62
          WV+KYRP  +  ++ +ED    L+ +  + + P+L+  GP G+GK T I+AL  ++ G +
Sbjct: 17 WVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGTN 76

Query: 63 AEKVKVE 69
           ++  +E
Sbjct: 77 YKEAVLE 83