Jatropha Genome Database

JcCA0220511.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0220511.20 + phase: 1 /partial
         (152 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G13440.2 | Symbols: GAPC-2, GAPC2 | GAPC2 (GLYCERALDEHYDE-3-P...   252   6e-68
AT1G13440.1 | Symbols: GAPC-2, GAPC2 | GAPC2 (GLYCERALDEHYDE-3-P...   252   7e-68
AT3G04120.1 | Symbols: GAPC, GAPC-1, GAPC1 | GAPC1 (GLYCERALDEHY...   252   7e-68
AT1G79530.1 | Symbols: GAPCP-1 | GAPCP-1 (GLYCERALDEHYDE-3-PHOSP...   228   1e-60
AT1G16300.1 | Symbols: GAPCP-2 | GAPCP-2; NAD or NADH binding / ...   226   4e-60
AT1G42970.1 | Symbols: GAPB | GAPB (GLYCERALDEHYDE-3-PHOSPHATE D...   114   2e-26
AT1G12900.2 | Symbols: GAPA-2 | GAPA-2 (GLYCERALDEHYDE 3-PHOSPHA...   103   4e-23
AT1G12900.1 | Symbols: GAPA-2 | GAPA-2 (GLYCERALDEHYDE 3-PHOSPHA...   102   1e-22
AT1G12900.3 | Symbols: GAPA-2 | GAPA-2 (GLYCERALDEHYDE 3-PHOSPHA...   102   1e-22
AT3G26650.1 | Symbols: GAPA, GAPA-1 | GAPA (GLYCERALDEHYDE 3-PHO...   101   2e-22

>AT1G13440.2 | Symbols: GAPC-2, GAPC2 | GAPC2
           (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2); NAD or
           NADH binding / binding / catalytic/
           glyceraldehyde-3-phosphate dehydrogenase
           (phosphorylating)/ glyceraldehyde-3-phosphate
           dehydrogenase | chr1:4608465-4610494 REVERSE
          Length = 310

 Score =  252 bits (644), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 124/149 (83%), Positives = 130/149 (87%)

Query: 1   TQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVV 60
           TQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLP+LNGKLTGM+FRVPTVDVSVV
Sbjct: 160 TQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRVPTVDVSVV 219

Query: 61  DLTVRLXXXXXXXXXXXXXXXXSEGSMKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIAL 120
           DLTVRL                SEG MKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIAL
Sbjct: 220 DLTVRLEKAATYDEIKKAIKEESEGKMKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIAL 279

Query: 121 NDNFVKLVSWYDNEWGYSSRVIDLICHIA 149
           +D FVKLVSWYDNEWGYSSRV+DLI H++
Sbjct: 280 SDKFVKLVSWYDNEWGYSSRVVDLIVHMS 308


>AT1G13440.1 | Symbols: GAPC-2, GAPC2 | GAPC2
           (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2); NAD or
           NADH binding / binding / catalytic/
           glyceraldehyde-3-phosphate dehydrogenase
           (phosphorylating)/ glyceraldehyde-3-phosphate
           dehydrogenase | chr1:4608465-4610494 REVERSE
          Length = 338

 Score =  252 bits (643), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 124/149 (83%), Positives = 130/149 (87%)

Query: 1   TQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVV 60
           TQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLP+LNGKLTGM+FRVPTVDVSVV
Sbjct: 188 TQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRVPTVDVSVV 247

Query: 61  DLTVRLXXXXXXXXXXXXXXXXSEGSMKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIAL 120
           DLTVRL                SEG MKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIAL
Sbjct: 248 DLTVRLEKAATYDEIKKAIKEESEGKMKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIAL 307

Query: 121 NDNFVKLVSWYDNEWGYSSRVIDLICHIA 149
           +D FVKLVSWYDNEWGYSSRV+DLI H++
Sbjct: 308 SDKFVKLVSWYDNEWGYSSRVVDLIVHMS 336


>AT3G04120.1 | Symbols: GAPC, GAPC-1, GAPC1 | GAPC1
           (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1);
           glyceraldehyde-3-phosphate dehydrogenase
           (phosphorylating)/ glyceraldehyde-3-phosphate
           dehydrogenase | chr3:1081077-1083131 FORWARD
          Length = 338

 Score =  252 bits (643), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 124/149 (83%), Positives = 130/149 (87%)

Query: 1   TQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVV 60
           TQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGM+FRVPTVDVSVV
Sbjct: 188 TQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVV 247

Query: 61  DLTVRLXXXXXXXXXXXXXXXXSEGSMKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIAL 120
           DLTVRL                SEG +KGILGYTEDDVVSTDFVGDNRSSIFDAKAGIAL
Sbjct: 248 DLTVRLEKAATYDEIKKAIKEESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIAL 307

Query: 121 NDNFVKLVSWYDNEWGYSSRVIDLICHIA 149
           +D FVKLVSWYDNEWGYSSRV+DLI H++
Sbjct: 308 SDKFVKLVSWYDNEWGYSSRVVDLIVHMS 336


>AT1G79530.1 | Symbols: GAPCP-1 | GAPCP-1
           (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF PLASTID 1);
           NAD or NADH binding / binding / catalytic/
           glyceraldehyde-3-phosphate dehydrogenase
           (phosphorylating)/ glyceraldehyde-3-phosphate
           dehydrogenase | chr1:29916232-29919088 REVERSE
          Length = 422

 Score =  228 bits (581), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 113/151 (74%), Positives = 123/151 (81%)

Query: 1   TQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVV 60
           TQKTVDGPSMKDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTGMAFRVPT +VSVV
Sbjct: 268 TQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTSNVSVV 327

Query: 61  DLTVRLXXXXXXXXXXXXXXXXSEGSMKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIAL 120
           DLT RL                SEG +KGILGYT++DVVS DFVGD+RSSIFDA AGI L
Sbjct: 328 DLTCRLEKGASYEDVKAAIKHASEGPLKGILGYTDEDVVSNDFVGDSRSSIFDANAGIGL 387

Query: 121 NDNFVKLVSWYDNEWGYSSRVIDLICHIASV 151
           + +FVKLVSWYDNEWGYS+RV+DLI H+A V
Sbjct: 388 SKSFVKLVSWYDNEWGYSNRVLDLIEHMALV 418


>AT1G16300.1 | Symbols: GAPCP-2 | GAPCP-2; NAD or NADH binding /
           binding / catalytic/ glyceraldehyde-3-phosphate
           dehydrogenase (phosphorylating)/
           glyceraldehyde-3-phosphate dehydrogenase |
           chr1:5574433-5577406 FORWARD
          Length = 420

 Score =  226 bits (576), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 111/151 (73%), Positives = 123/151 (81%)

Query: 1   TQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVV 60
           TQKTVDGPSMKDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTGMAFRVPT +VSVV
Sbjct: 266 TQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVV 325

Query: 61  DLTVRLXXXXXXXXXXXXXXXXSEGSMKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIAL 120
           DLT RL                SEG ++GILGYTE+DVVS DF+GD+RSSIFDA AGI L
Sbjct: 326 DLTCRLEKDASYEDVKAAIKFASEGPLRGILGYTEEDVVSNDFLGDSRSSIFDANAGIGL 385

Query: 121 NDNFVKLVSWYDNEWGYSSRVIDLICHIASV 151
           + +F+KLVSWYDNEWGYS+RV+DLI H+A V
Sbjct: 386 SKSFMKLVSWYDNEWGYSNRVLDLIEHMALV 416


>AT1G42970.1 | Symbols: GAPB | GAPB (GLYCERALDEHYDE-3-PHOSPHATE
           DEHYDROGENASE B SUBUNIT); glyceraldehyde-3-phosphate
           dehydrogenase (NADP+)/ glyceraldehyde-3-phosphate
           dehydrogenase | chr1:16127552-16129584 FORWARD
          Length = 447

 Score =  114 bits (285), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/130 (46%), Positives = 80/130 (61%), Gaps = 1/130 (0%)

Query: 22  NIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLXXX-XXXXXXXXXXX 80
           NI+P+STGAAKAV  VLP L GKL G+A RVPT +VSVVDL + +               
Sbjct: 287 NIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVINVEKKGLTAEDVNEAFR 346

Query: 81  XXSEGSMKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSSR 140
             + G MKGIL   +  +VS DF   + S+  D+   + + D+ VK+V+WYDNEWGYS R
Sbjct: 347 KAANGPMKGILDVCDAPLVSVDFRCSDVSTTIDSSLTMVMGDDMVKVVAWYDNEWGYSQR 406

Query: 141 VIDLICHIAS 150
           V+DL   +AS
Sbjct: 407 VVDLAHLVAS 416


>AT1G12900.2 | Symbols: GAPA-2 | GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE
           DEHYDROGENASE A SUBUNIT 2); NAD or NADH binding /
           binding / catalytic/ glyceraldehyde-3-phosphate
           dehydrogenase (phosphorylating)/
           glyceraldehyde-3-phosphate dehydrogenase |
           chr1:4392634-4393747 REVERSE
          Length = 317

 Score =  103 bits (257), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 59/123 (47%), Positives = 79/123 (64%)

Query: 22  NIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLXXXXXXXXXXXXXXX 81
           NI+P+STGAAKAV  VLP L GKL G+A RVPT +VSVVDL V++               
Sbjct: 186 NIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRD 245

Query: 82  XSEGSMKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSSRV 141
            +E  +KGIL   ++ +VS DF   + SS  D+   + + D+ VK+++WYDNEWGYS RV
Sbjct: 246 AAEKELKGILDVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRV 305

Query: 142 IDL 144
           +DL
Sbjct: 306 VDL 308


>AT1G12900.1 | Symbols: GAPA-2 | GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE
           DEHYDROGENASE A SUBUNIT 2); NAD or NADH binding /
           binding / catalytic/ glyceraldehyde-3-phosphate
           dehydrogenase (phosphorylating)/
           glyceraldehyde-3-phosphate dehydrogenase |
           chr1:4392634-4394283 REVERSE
          Length = 399

 Score =  102 bits (254), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/123 (47%), Positives = 79/123 (64%)

Query: 22  NIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLXXXXXXXXXXXXXXX 81
           NI+P+STGAAKAV  VLP L GKL G+A RVPT +VSVVDL V++               
Sbjct: 268 NIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRD 327

Query: 82  XSEGSMKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSSRV 141
            +E  +KGIL   ++ +VS DF   + SS  D+   + + D+ VK+++WYDNEWGYS RV
Sbjct: 328 AAEKELKGILDVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRV 387

Query: 142 IDL 144
           +DL
Sbjct: 388 VDL 390


>AT1G12900.3 | Symbols: GAPA-2 | GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE
           DEHYDROGENASE A SUBUNIT 2); NAD or NADH binding /
           binding / catalytic/ glyceraldehyde-3-phosphate
           dehydrogenase (phosphorylating)/
           glyceraldehyde-3-phosphate dehydrogenase |
           chr1:4392634-4393850 REVERSE
          Length = 350

 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/123 (47%), Positives = 79/123 (64%)

Query: 22  NIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLXXXXXXXXXXXXXXX 81
           NI+P+STGAAKAV  VLP L GKL G+A RVPT +VSVVDL V++               
Sbjct: 219 NIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRD 278

Query: 82  XSEGSMKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSSRV 141
            +E  +KGIL   ++ +VS DF   + SS  D+   + + D+ VK+++WYDNEWGYS RV
Sbjct: 279 AAEKELKGILDVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRV 338

Query: 142 IDL 144
           +DL
Sbjct: 339 VDL 341


>AT3G26650.1 | Symbols: GAPA, GAPA-1 | GAPA (GLYCERALDEHYDE
           3-PHOSPHATE DEHYDROGENASE A SUBUNIT);
           glyceraldehyde-3-phosphate dehydrogenase/ protein
           binding | chr3:9795226-9796848 FORWARD
          Length = 396

 Score =  101 bits (251), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/123 (47%), Positives = 79/123 (64%)

Query: 22  NIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLXXXXXXXXXXXXXXX 81
           NI+P+STGAAKAV  VLP L GKL G+A RVPT +VSVVDL V++               
Sbjct: 265 NIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRD 324

Query: 82  XSEGSMKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSSRV 141
            +E  +KGIL   ++ +VS DF   + S+  D+   + + D+ VK+++WYDNEWGYS RV
Sbjct: 325 SAEKELKGILDVCDEPLVSVDFRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRV 384

Query: 142 IDL 144
           +DL
Sbjct: 385 VDL 387