Jatropha Genome Database

JcCA0217021.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0217021.10 - phase: 2 /partial
         (227 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G23330.1 | Symbols:  | riboflavin biosynthesis protein-relate...   292   9e-80
AT5G08340.1 | Symbols:  | riboflavin biosynthesis protein-relate...   284   3e-77
AT5G08340.2 | Symbols:  | riboflavin biosynthesis protein-relate...   266   6e-72

>AT5G23330.1 | Symbols:  | riboflavin biosynthesis protein-related |
           chr5:7854194-7855738 FORWARD
          Length = 354

 Score =  292 bits (748), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 139/228 (60%), Positives = 176/228 (77%), Gaps = 5/228 (2%)

Query: 1   APIVAKCDRSRVLATWAPYCGNIAPTEFQIEFSSVRHLNPRQFVEKLSNELKVCGVVAGE 60
           APIVAKCDR RVL++WA YCGNIAP EF+IEF+SVRHLNP+QFVEKLS EL+VCGVVAGE
Sbjct: 130 APIVAKCDRKRVLSSWASYCGNIAPVEFEIEFASVRHLNPQQFVEKLSRELRVCGVVAGE 189

Query: 61  NYRFGYKAAGDASELVRLCEEYGMEAYIIKSVMDKNKDLRNMNLSD--LKDRGQVSSTRV 118
           NYRFGY+A+GDASELVRLC+++G+ AYII SVMDKN+   N    D   K+RGQVSSTRV
Sbjct: 190 NYRFGYRASGDASELVRLCKDFGISAYIINSVMDKNQVSVNTEEEDSKSKERGQVSSTRV 249

Query: 119 RHALAVGDMKYVSELLGRRHRLVMMLKDQKGLTSTSSKWKFSITRSCLLNLPPKDGFYEN 178
           RHALA GD++YV+ELLGR HR++   + Q     TS + + S+  S LLNLPP +G Y+ 
Sbjct: 250 RHALAAGDVRYVTELLGRPHRVISRTRTQD---LTSKRGRISLQTSSLLNLPPGNGVYKA 306

Query: 179 CFLIFGNAEPVKCSVFIDSTYIHLEIDEIGLSNYNSSQAFQLMGVEFG 226
           C LI G+  P+ C V +D++ +++E +E    N + SQ FQL+G+EFG
Sbjct: 307 CSLIVGDKHPISCKVIVDTSNLYIETEEERFHNSDESQEFQLLGIEFG 354


>AT5G08340.1 | Symbols:  | riboflavin biosynthesis protein-related |
           chr5:2683901-2685604 FORWARD
          Length = 367

 Score =  284 bits (727), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 138/226 (61%), Positives = 169/226 (74%), Gaps = 4/226 (1%)

Query: 1   APIVAKCDRSRVLATWAPYCGNIAPTEFQIEFSSVRHLNPRQFVEKLSNELKVCGVVAGE 60
           APIVAKCDR RVL +WA YCG+ AP E++IEF+SVRHL PRQFVEKLS EL+VCGVVAGE
Sbjct: 146 APIVAKCDRQRVLTSWASYCGDRAPEEYEIEFASVRHLTPRQFVEKLSKELRVCGVVAGE 205

Query: 61  NYRFGYKAAGDASELVRLCEEYGMEAYIIKSVMDKNKDLRNMNLSDLKDRGQVSSTRVRH 120
           NYRFGYKA+GDASELVRLCEE G+ A II SVMD  +     +  D KDRGQVSSTRVR 
Sbjct: 206 NYRFGYKASGDASELVRLCEECGITACIINSVMDMKQGSAKRDSGDSKDRGQVSSTRVRQ 265

Query: 121 ALAVGDMKYVSELLGRRHRLVMMLKDQKGLTSTSSKWKFSITRSCLLNLPPKDGFYENCF 180
           ALA GDM+YVSELLGR HRL++ ++ Q       S+   S+ RS +LNLPP  G Y+ C 
Sbjct: 266 ALAAGDMRYVSELLGRAHRLILRVRTQ----DMPSERMISVPRSSILNLPPGIGIYKACL 321

Query: 181 LIFGNAEPVKCSVFIDSTYIHLEIDEIGLSNYNSSQAFQLMGVEFG 226
           L+ G+   V C+V +D++ IH+E +E+ L N + SQ F+L+ VEFG
Sbjct: 322 LLVGDESSVPCTVVVDTSNIHVETEEVRLCNLDWSQEFRLVSVEFG 367


>AT5G08340.2 | Symbols:  | riboflavin biosynthesis protein-related |
           chr5:2683901-2685682 FORWARD
          Length = 351

 Score =  266 bits (681), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 128/206 (62%), Positives = 155/206 (75%), Gaps = 4/206 (1%)

Query: 1   APIVAKCDRSRVLATWAPYCGNIAPTEFQIEFSSVRHLNPRQFVEKLSNELKVCGVVAGE 60
           APIVAKCDR RVL +WA YCG+ AP E++IEF+SVRHL PRQFVEKLS EL+VCGVVAGE
Sbjct: 146 APIVAKCDRQRVLTSWASYCGDRAPEEYEIEFASVRHLTPRQFVEKLSKELRVCGVVAGE 205

Query: 61  NYRFGYKAAGDASELVRLCEEYGMEAYIIKSVMDKNKDLRNMNLSDLKDRGQVSSTRVRH 120
           NYRFGYKA+GDASELVRLCEE G+ A II SVMD  +     +  D KDRGQVSSTRVR 
Sbjct: 206 NYRFGYKASGDASELVRLCEECGITACIINSVMDMKQGSAKRDSGDSKDRGQVSSTRVRQ 265

Query: 121 ALAVGDMKYVSELLGRRHRLVMMLKDQKGLTSTSSKWKFSITRSCLLNLPPKDGFYENCF 180
           ALA GDM+YVSELLGR HRL++ ++ Q       S+   S+ RS +LNLPP  G Y+ C 
Sbjct: 266 ALAAGDMRYVSELLGRAHRLILRVRTQ----DMPSERMISVPRSSILNLPPGIGIYKACL 321

Query: 181 LIFGNAEPVKCSVFIDSTYIHLEIDE 206
           L+ G+   V C+V +D++ IH+E +E
Sbjct: 322 LLVGDESSVPCTVVVDTSNIHVETEE 347