Jatropha Genome Database

JcCA0215901.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0215901.10 - phase: 1 /partial
         (105 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G01640.1 | Symbols:  | GHMP kinase family protein | chr3:2394...   186   2e-48
AT5G14470.1 | Symbols:  | GHMP kinase-related | chr5:4663029-466...   164   1e-41

>AT3G01640.1 | Symbols:  | GHMP kinase family protein |
           chr3:239418-241198 FORWARD
          Length = 362

 Score =  186 bits (473), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 88/105 (83%), Positives = 97/105 (92%)

Query: 1   EGYYGGVRLLMAICRVFYKHCKENGIDLHSRNFTLSYDTNIPRQTGLSGSSAIVTAALSC 60
           EGYYGGVRLLMAIC+VF  +CKEN I LH  NF+LSYDTNIPRQTGLSGSSAIV+AAL+C
Sbjct: 85  EGYYGGVRLLMAICKVFRNYCKENDIQLHQANFSLSYDTNIPRQTGLSGSSAIVSAALNC 144

Query: 61  LLDFYKVRHLIKVEIRPKLVLSAEQELGIVAGLQDRVAQVYGGLV 105
           LLDFY VRHLIKV++RP +VLSAE+ELGIVAGLQDRVAQVYGGLV
Sbjct: 145 LLDFYNVRHLIKVQVRPNIVLSAEKELGIVAGLQDRVAQVYGGLV 189


>AT5G14470.1 | Symbols:  | GHMP kinase-related |
           chr5:4663029-4664177 REVERSE
          Length = 272

 Score =  164 bits (415), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 75/93 (80%), Positives = 85/93 (91%)

Query: 11  MAICRVFYKHCKENGIDLHSRNFTLSYDTNIPRQTGLSGSSAIVTAALSCLLDFYKVRHL 70
           MAIC+VF  +CKENGI LH +NFTLSYDTNIPRQTGLSGSSAIV+AALSCLLDFY VR  
Sbjct: 1   MAICKVFRNYCKENGIQLHDKNFTLSYDTNIPRQTGLSGSSAIVSAALSCLLDFYNVRQS 60

Query: 71  IKVEIRPKLVLSAEQELGIVAGLQDRVAQVYGG 103
           I++E+RP L+L+AE+ELGIVAGLQDRVAQVYGG
Sbjct: 61  IRIEVRPNLILNAEKELGIVAGLQDRVAQVYGG 93