Jatropha Genome Database

JcCA0207521.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0207521.20 + phase: 1 /TE/partial
         (447 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21280.1 | Symbols:  | unknown protein | chr1:7447690-7448403...    84   2e-16

>AT1G21280.1 | Symbols:  | unknown protein | chr1:7447690-7448403
           REVERSE
          Length = 237

 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 90/198 (45%), Gaps = 33/198 (16%)

Query: 22  ISRVKSDGTNFLAWSCLL--FIEARGLQGYLDGGAIKPVSTDPGFNKWKSENSLIMSWLI 79
           I ++  D  N++AW      F+      G++DG   KP    P +  W+  N+++M WL+
Sbjct: 32  IQKLSKDEDNYVAWKIRFRSFLRVTKKFGFIDGTLPKPDPFSPLYQPWEQCNAMVMYWLM 91

Query: 80  NSMQPTISRGYLLLDTAKKIWDAASH------------------ETKQGDLTIAQYFAKL 121
           NSM   +    +  +TA K+W+                        +QG  ++ +YF KL
Sbjct: 92  NSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRRRLATLRQGGDSVEEYFGKL 151

Query: 122 SGLWQELDCYQDF--------QAKCTDDATQVQKLIEVERVYDFLAG--LNNEYDQIRVQ 171
           S +W EL  Y             +CT  A + +   E E+ Y+FL G  LN  ++ +  +
Sbjct: 152 SKVWMELSEYAPIPECKCGGCNCECTKRAEEAR---EKEQRYEFLMGLKLNQGFEAVTTK 208

Query: 172 VLG*DPFPSLQQAYSFVQ 189
           ++   P PSL +A++ V+
Sbjct: 209 IMFQKPPPSLHEAFAMVK 226