Jatropha Genome Database

JcCA0207121.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0207121.10 + phase: 0 /pseudo
         (238 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G09090.2 | Symbols: DEX1 | DEX1 (DEFECTIVE IN EXINE FORMATION...   316   9e-87
AT3G09090.1 | Symbols: DEX1 | DEX1 (DEFECTIVE IN EXINE FORMATION...   315   1e-86

>AT3G09090.2 | Symbols: DEX1 | DEX1 (DEFECTIVE IN EXINE FORMATION
           1); calcium ion binding | chr3:2783165-2787552 REVERSE
          Length = 817

 Score =  316 bits (809), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 145/173 (83%), Positives = 160/173 (92%)

Query: 31  KNKFREREASDDALGYPDIDEDALLNTQCPKNLELRWQTEVSSSIYASPLIADINSDGKL 90
           +NKFRER+A+DD LGYPDIDEDALLNTQCPK LELRWQTEV+SS+YA+PLIADINSDGKL
Sbjct: 25  ENKFRERKATDDELGYPDIDEDALLNTQCPKKLELRWQTEVTSSVYATPLIADINSDGKL 84

Query: 91  DIVVPSFVHYLEVLEGSDGDKMPGWPAFHQSTVHASPLLYDIDKDGVREIALATYNGEVL 150
           DIVVPSFVHYLEVLEG+DGDKMPGWPAFHQS VH+SPLL+DIDKDGVREIALATYN EVL
Sbjct: 85  DIVVPSFVHYLEVLEGADGDKMPGWPAFHQSNVHSSPLLFDIDKDGVREIALATYNAEVL 144

Query: 151 FFRVSGYMMTEKLVVPRRSVKKDWHVGLNPDPVDRSHPDVHDEQLISEAAGKK 203
           FFRVSG++M++KL VPRR V K+WHVGLNPDPVDRSHPDVHD+ L  EA   K
Sbjct: 145 FFRVSGFLMSDKLEVPRRKVHKNWHVGLNPDPVDRSHPDVHDDVLEEEAMAMK 197


>AT3G09090.1 | Symbols: DEX1 | DEX1 (DEFECTIVE IN EXINE FORMATION
           1); calcium ion binding | chr3:2782912-2787552 REVERSE
          Length = 896

 Score =  315 bits (808), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 145/173 (83%), Positives = 160/173 (92%)

Query: 31  KNKFREREASDDALGYPDIDEDALLNTQCPKNLELRWQTEVSSSIYASPLIADINSDGKL 90
           +NKFRER+A+DD LGYPDIDEDALLNTQCPK LELRWQTEV+SS+YA+PLIADINSDGKL
Sbjct: 25  ENKFRERKATDDELGYPDIDEDALLNTQCPKKLELRWQTEVTSSVYATPLIADINSDGKL 84

Query: 91  DIVVPSFVHYLEVLEGSDGDKMPGWPAFHQSTVHASPLLYDIDKDGVREIALATYNGEVL 150
           DIVVPSFVHYLEVLEG+DGDKMPGWPAFHQS VH+SPLL+DIDKDGVREIALATYN EVL
Sbjct: 85  DIVVPSFVHYLEVLEGADGDKMPGWPAFHQSNVHSSPLLFDIDKDGVREIALATYNAEVL 144

Query: 151 FFRVSGYMMTEKLVVPRRSVKKDWHVGLNPDPVDRSHPDVHDEQLISEAAGKK 203
           FFRVSG++M++KL VPRR V K+WHVGLNPDPVDRSHPDVHD+ L  EA   K
Sbjct: 145 FFRVSGFLMSDKLEVPRRKVHKNWHVGLNPDPVDRSHPDVHDDVLEEEAMAMK 197