Jatropha Genome Database

JcCA0205491.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0205491.10 + phase: 2 /pseudo/partial
         (93 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G57570.1 | Symbols:  | binding | chr3:21312598-21320105 FORWARD     56   4e-09

>AT3G57570.1 | Symbols:  | binding | chr3:21312598-21320105 FORWARD
          Length = 1068

 Score = 56.2 bits (134), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)

Query: 17  QDIANNLIERLSDEEIAIRHQASKLISMIDPSLVMPALVHLLYSSDEGL-SYASTAFTAM 75
           ++IA+ L++ L DEE  I  Q S+L+  I+PS V+P LV+L+Y+ +  + S A+     +
Sbjct: 485 KEIADCLLKCLDDEETCICKQTSELLKSIEPSFVLPNLVNLIYAPNGKVQSSATETLLGV 544

Query: 76  LQYHNQKPEVICMLLDCL 93
           L++H +  +VICMLL  L
Sbjct: 545 LKHHKEDFDVICMLLTSL 562