Jatropha Genome Database

JcCA0199381.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0199381.10 + phase: 0 /pseudo/partial
         (148 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G51560.1 | Symbols:  | FMN binding | chr1:19119900-19121859 R...   263   4e-71
AT3G21140.1 | Symbols:  | FMN binding | chr3:7409696-7412086 REV...   262   5e-71

>AT1G51560.1 | Symbols:  | FMN binding | chr1:19119900-19121859
           REVERSE
          Length = 392

 Score =  263 bits (671), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 122/146 (83%), Positives = 136/146 (93%)

Query: 1   EWAHKQYIAKHQQGPSQQWGNFYYFRMKNISDIYFIGGFGTVAWVDVKEYEALKPDKIAV 60
           EWAHKQY+ KH QGPSQQWGNF+YFRM+NISDIYFIGGFGTVAW++V EYE L+PDKIAV
Sbjct: 245 EWAHKQYMLKHHQGPSQQWGNFHYFRMQNISDIYFIGGFGTVAWINVNEYETLQPDKIAV 304

Query: 61  DGGEQNLKELNAIFSKPLKELLSTEAEIDDAALISIDSKGIDIRVRQGAQFNIQRLSFEE 120
           DGGEQNLKELNAIFSKPL+ELLS+EAE+DDAA+ISIDSKGIDIRVRQGAQF IQRL+FEE
Sbjct: 305 DGGEQNLKELNAIFSKPLRELLSSEAELDDAAIISIDSKGIDIRVRQGAQFKIQRLAFEE 364

Query: 121 GHAVETLE*AKAALWKLINKG*VHNL 146
            H VETLE AK+ALWK+I KG +HNL
Sbjct: 365 SHGVETLEEAKSALWKVIEKGKLHNL 390


>AT3G21140.1 | Symbols:  | FMN binding | chr3:7409696-7412086
           REVERSE
          Length = 387

 Score =  262 bits (670), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 121/140 (86%), Positives = 134/140 (95%)

Query: 1   EWAHKQYIAKHQQGPSQQWGNFYYFRMKNISDIYFIGGFGTVAWVDVKEYEALKPDKIAV 60
           EWAHKQYIAKH  GPS+QWGNF+YFRM+NISDIYFIGGFGTVAWVDVKEYE L+PDKIAV
Sbjct: 241 EWAHKQYIAKHPHGPSEQWGNFHYFRMQNISDIYFIGGFGTVAWVDVKEYEGLQPDKIAV 300

Query: 61  DGGEQNLKELNAIFSKPLKELLSTEAEIDDAALISIDSKGIDIRVRQGAQFNIQRLSFEE 120
           DGGE+NLKELNAIFSKPL+ELLSTE+E+DDAALISIDSKGID+RVRQGAQFNIQRL+FEE
Sbjct: 301 DGGERNLKELNAIFSKPLRELLSTESEVDDAALISIDSKGIDVRVRQGAQFNIQRLAFEE 360

Query: 121 GHAVETLE*AKAALWKLINK 140
           GH VETLE AK+ALWK++ K
Sbjct: 361 GHGVETLEEAKSALWKVLEK 380