Jatropha Genome Database

JcCA0194091.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0194091.10 - phase: 2 /partial
         (473 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G25100.1 | Symbols: CDC45 | CDC45 (cell division cycle 45) | ...   734   0.0  

>AT3G25100.1 | Symbols: CDC45 | CDC45 (cell division cycle 45) |
           chr3:9144292-9146082 FORWARD
          Length = 596

 Score =  734 bits (1895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/471 (74%), Positives = 394/471 (83%)

Query: 3   LLNLGPRARVFVIDSHRPIHLHNLSEHNDSVIVLYTHDDEHQADLAYDFDVSALANASEL 62
           +L LGP ARVFV+DSHRPIHLHNLS++N+ V+VL+T DDE Q DLAYDFDV  LAN S  
Sbjct: 102 VLKLGPSARVFVVDSHRPIHLHNLSDYNEQVVVLHTDDDERQGDLAYDFDVLKLANESFQ 161

Query: 63  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRRRVSKDNDPVQLFRKLKREYYHMGTFHG 122
                                         +  +  K  D V++F+KLKR+YY MGTFHG
Sbjct: 162 LRVEDAGEESDEEEEDEEEDEEDDDDDDGDRPSKRRKMGDGVKVFKKLKRDYYKMGTFHG 221

Query: 123 KPSGCLMYDLSHSLRKNTNELLWLACVSLTDQFVHERLTDERYQAGVMELEQHINSSGNL 182
           KPSGCL+++LSH LRKNTNELLWLACVSLTDQFVHERLTDERYQA VMELEQHINSSGN+
Sbjct: 222 KPSGCLLFELSHMLRKNTNELLWLACVSLTDQFVHERLTDERYQAAVMELEQHINSSGNI 281

Query: 183 EAVSVVTLKDGTKIRAPETSRIQYEDEPRLMLLREWNLFDSMLCSSYIAPKLKTWSDNGM 242
           + ++ VTLKDGTK+RAP+ SRI YE+EPRLMLLREW LFDSMLCSSYIA KLKTWSDNG+
Sbjct: 282 DKITSVTLKDGTKVRAPDCSRISYEEEPRLMLLREWTLFDSMLCSSYIATKLKTWSDNGI 341

Query: 243 KKLKLLLARMGFALVDCQQKFQYMNLEVKRKMKDEFERFLPEYGLTDFYYRSFLRLHGYS 302
           KKLKLLLARMGFAL++CQQKF YM+LEVKRKMK EF+RFLPEYGL DFYYRSFLRLHGYS
Sbjct: 342 KKLKLLLARMGFALIECQQKFPYMSLEVKRKMKQEFDRFLPEYGLNDFYYRSFLRLHGYS 401

Query: 303 SRVSAADVVYGVTALLESFVNSDGSCASKQFGVAYDALSLNNLDKLKIGMQQAIKVQRAI 362
           SRVSAADVVYG+TALLESF+ S GS ASKQFG AYDALSLNNLDKL+ GMQQAIKVQRAI
Sbjct: 402 SRVSAADVVYGITALLESFLGSGGSSASKQFGEAYDALSLNNLDKLRSGMQQAIKVQRAI 461

Query: 363 LRQGSTAITKSGSVRSGRKFRWVKLEDSVDTKLLGYPQALTKFCYFIMDALREKGARAKP 422
           LRQGS AITKSG +RSGRKFRWVK+EDS+D K LGYPQALTKFCYF+MDALREKGAR KP
Sbjct: 462 LRQGSAAITKSGCIRSGRKFRWVKIEDSMDAKYLGYPQALTKFCYFLMDALREKGARMKP 521

Query: 423 LVCACLSQEPNKMLIVGVCGKPRLGAVQGNAFGVAFRNAAEEIGAEVFHEL 473
           ++CAC SQ+P K+L+VGVCGKPRLGAV+GNAFG AFR AA+E  A+ FHEL
Sbjct: 522 MLCACASQQPGKILVVGVCGKPRLGAVRGNAFGNAFRKAAQESRADYFHEL 572