Jatropha Genome Database

JcCA0192731.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0192731.10 + phase: 0 /pseudo/partial
         (89 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G21960.1 | Symbols:  | unknown protein | chr2:9354990-9356958...    84   1e-17

>AT2G21960.1 | Symbols:  | unknown protein | chr2:9354990-9356958
           FORWARD
          Length = 332

 Score = 84.3 bits (207), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 37/59 (62%), Positives = 50/59 (84%)

Query: 31  VSRSKPQLSKDQQQNLTRWAVLFAGSLVKNNKLLHEALMKAMLSKANVLECIEAIEKAA 89
           ++RS+P++S +QQQNLTRWAVL++ SL+KNNK +HEALM AM   A+VLECI+ IE A+
Sbjct: 274 INRSQPKISNEQQQNLTRWAVLYSASLLKNNKTIHEALMAAMSKNASVLECIQTIETAS 332