Jatropha Genome Database

JcCA0192231.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0192231.10 + phase: 0 /partial/short
         (45 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G20630.1 | Symbols:  | protein phosphatase 2C, putative / PP2...    52   6e-08
AT4G28400.1 | Symbols:  | protein phosphatase 2C, putative / PP2...    49   6e-07
AT1G78200.2 | Symbols:  | protein phosphatase 2C, putative / PP2...    49   7e-07
AT1G78200.1 | Symbols:  | protein phosphatase 2C, putative / PP2...    49   7e-07
AT2G20630.2 | Symbols:  | protein phosphatase 2C, putative / PP2...    46   4e-06

>AT2G20630.1 | Symbols:  | protein phosphatase 2C, putative / PP2C,
           putative | chr2:8897826-8899648 REVERSE
          Length = 279

 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 28/44 (63%)

Query: 1   VMQNQEAVDLVKPIKDPQXXXXXXXXXXXXXKSKDDISCIVIRF 44
           VM NQEAVDL+K IKDPQ             +S DDISCIV+RF
Sbjct: 235 VMSNQEAVDLIKSIKDPQAAAKELIEEAVSKQSTDDISCIVVRF 278


>AT4G28400.1 | Symbols:  | protein phosphatase 2C, putative / PP2C,
           putative | chr4:14048499-14050118 FORWARD
          Length = 283

 Score = 48.9 bits (115), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/44 (52%), Positives = 27/44 (61%)

Query: 1   VMQNQEAVDLVKPIKDPQXXXXXXXXXXXXXKSKDDISCIVIRF 44
           V+ NQEAVD +K IKDP              KSKDDISCIV++F
Sbjct: 239 VLSNQEAVDAIKSIKDPHAAAKHLIEEAISRKSKDDISCIVVKF 282


>AT1G78200.2 | Symbols:  | protein phosphatase 2C, putative / PP2C,
           putative | chr1:29420483-29421650 FORWARD
          Length = 283

 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 27/44 (61%)

Query: 1   VMQNQEAVDLVKPIKDPQXXXXXXXXXXXXXKSKDDISCIVIRF 44
           VM NQEAVD+ K +KDP+              SKDDISCIV+RF
Sbjct: 239 VMSNQEAVDVAKKLKDPKEAARQVVAEALKRNSKDDISCIVVRF 282


>AT1G78200.1 | Symbols:  | protein phosphatase 2C, putative / PP2C,
           putative | chr1:29420483-29421650 FORWARD
          Length = 283

 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 27/44 (61%)

Query: 1   VMQNQEAVDLVKPIKDPQXXXXXXXXXXXXXKSKDDISCIVIRF 44
           VM NQEAVD+ K +KDP+              SKDDISCIV+RF
Sbjct: 239 VMSNQEAVDVAKKLKDPKEAARQVVAEALKRNSKDDISCIVVRF 282


>AT2G20630.2 | Symbols:  | protein phosphatase 2C, putative / PP2C,
           putative | chr2:8897335-8899648 REVERSE
          Length = 290

 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/41 (56%), Positives = 25/41 (60%)

Query: 1   VMQNQEAVDLVKPIKDPQXXXXXXXXXXXXXKSKDDISCIV 41
           VM NQEAVDL+K IKDPQ             +S DDISCIV
Sbjct: 235 VMSNQEAVDLIKSIKDPQAAAKELIEEAVSKQSTDDISCIV 275