Jatropha Genome Database

JcCA0165421.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0165421.10 + phase: 0 
         (72 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G10590.1 | Symbols: UBP10 | ubiquitin carboxyl-terminal hydro...    68   1e-12
AT4G10590.2 | Symbols: UBP10 | ubiquitin carboxyl-terminal hydro...    68   1e-12
AT4G10570.1 | Symbols: UBP9 | UBP9 (UBIQUITIN-SPECIFIC PROTEASE ...    66   4e-12
AT1G32850.1 | Symbols: UBP11 | UBP11 (UBIQUITIN-SPECIFIC PROTEAS...    55   1e-08

>AT4G10590.1 | Symbols: UBP10 | ubiquitin carboxyl-terminal
          hydrolase family protein | chr4:6538919-6543272 REVERSE
          Length = 910

 Score = 67.8 bits (164), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 41/53 (77%)

Query: 1  MTIADSGCLMENGGSCLPCTPEEEKQIVKELIDEAELDLKEGNLYYVVSARYF 53
          MTI +S  ++ENG    P TPEEEK+IV ELI E+E +LKEGNLY+V+S R++
Sbjct: 1  MTIPNSDFMIENGVCDFPTTPEEEKRIVSELITESEDNLKEGNLYFVISKRWY 53


>AT4G10590.2 | Symbols: UBP10 | ubiquitin carboxyl-terminal
          hydrolase family protein | chr4:6538919-6543272 REVERSE
          Length = 910

 Score = 67.8 bits (164), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 41/53 (77%)

Query: 1  MTIADSGCLMENGGSCLPCTPEEEKQIVKELIDEAELDLKEGNLYYVVSARYF 53
          MTI +S  ++ENG    P TPEEEK+IV ELI E+E +LKEGNLY+V+S R++
Sbjct: 1  MTIPNSDFMIENGVCDFPTTPEEEKRIVSELITESEDNLKEGNLYFVISKRWY 53


>AT4G10570.1 | Symbols: UBP9 | UBP9 (UBIQUITIN-SPECIFIC PROTEASE
          9); cysteine-type endopeptidase/ ubiquitin
          thiolesterase | chr4:6523657-6528058 REVERSE
          Length = 923

 Score = 66.2 bits (160), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 1  MTIADSGCLMENGGSCLPCTPEEEKQIVKELIDEAELDLKEGNLYYVVSARYF 53
          MTI +S  ++ENG   LP TPEEEK+IV EL  E+E +LK+GNLY+V+S R++
Sbjct: 1  MTIPNSDFMLENGVCDLPFTPEEEKRIVSELTSESEDNLKQGNLYFVISKRWY 53


>AT1G32850.1 | Symbols: UBP11 | UBP11 (UBIQUITIN-SPECIFIC PROTEASE
          11); cysteine-type endopeptidase/ ubiquitin
          thiolesterase | chr1:11902629-11906900 FORWARD
          Length = 892

 Score = 54.7 bits (130), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/34 (67%), Positives = 30/34 (88%)

Query: 20 TPEEEKQIVKELIDEAELDLKEGNLYYVVSARYF 53
          TPEEE++IV EL +EAE DLKEGNLY+V+S R++
Sbjct: 18 TPEEERRIVTELNNEAEADLKEGNLYFVISNRWY 51