Jatropha Genome Database

JcCA0155261.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0155261.30 + phase: 0 /pseudo/partial
         (254 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G39810.1 | Symbols:  | exonuclease/ nucleic acid binding | ch...   105   3e-23
AT1G74390.1 | Symbols:  | exonuclease family protein | chr1:2796...    91   5e-19
AT5G07710.1 | Symbols:  | exonuclease family protein | chr5:2453...    91   6e-19
AT5G61390.1 | Symbols:  | exonuclease family protein | chr5:2467...    89   2e-18

>AT4G39810.1 | Symbols:  | exonuclease/ nucleic acid binding |
          chr4:18474608-18475735 REVERSE
          Length = 255

 Score =  105 bits (262), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 56/75 (74%), Positives = 64/75 (85%)

Query: 7  TSATEIVFFDLETTVPNRIGQKFWVLEFGAIIVCPRKLVELESFSTLIRPKDLSVVALKS 66
          T   EIVFFDLET VPN+ GQ F +LEFGAIIVCP+KL ELESF+TLI+PKDLSVV+++S
Sbjct: 5  TFPNEIVFFDLETNVPNKAGQHFHILEFGAIIVCPKKLEELESFTTLIQPKDLSVVSIRS 64

Query: 67 SRSDGITREAVANAP 81
          SRSDGITR  V NAP
Sbjct: 65 SRSDGITRAKVTNAP 79



 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/43 (58%), Positives = 33/43 (76%)

Query: 212 QRTVPYTRGSLGKVTEGVKNLFCKAQETKSINKLIKHSHSLLR 254
           QR +PY++GSL K+T+ VKNL  KAQ  +++  LI HSHSLLR
Sbjct: 213 QRAMPYSKGSLEKMTQNVKNLLSKAQGNQTLQSLINHSHSLLR 255


>AT1G74390.1 | Symbols:  | exonuclease family protein |
          chr1:27961760-27963826 REVERSE
          Length = 506

 Score = 91.3 bits (225), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 41/71 (57%), Positives = 55/71 (77%)

Query: 10 TEIVFFDLETTVPNRIGQKFWVLEFGAIIVCPRKLVELESFSTLIRPKDLSVVALKSSRS 69
          +EI FFDLET VP + G+ F +LEFGAI+VCPR+L EL S+STL+RP DLS+++  + R 
Sbjct: 11 SEIAFFDLETAVPTKSGEPFAILEFGAILVCPRRLEELYSYSTLVRPTDLSLISTLTKRR 70

Query: 70 DGITREAVANA 80
           GITR+ V +A
Sbjct: 71 SGITRDGVLSA 81


>AT5G07710.1 | Symbols:  | exonuclease family protein |
          chr5:2453310-2455357 FORWARD
          Length = 468

 Score = 91.3 bits (225), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 41/77 (53%), Positives = 59/77 (76%), Gaps = 1/77 (1%)

Query: 10 TEIVFFDLETTVPNRIGQKFWVLEFGAIIVCPRKLVELESFSTLIRPKDLSVVALKSSRS 69
          +EI FFD+ETTVP R GQ+F +LEFG+I+VCP+KL EL S++TL++P DLS+++  S R 
Sbjct: 7  SEIAFFDVETTVPKR-GQRFAILEFGSILVCPKKLTELRSYTTLVQPADLSLISSLSVRC 65

Query: 70 DGITREAVANAPILKKL 86
          +GI R+ V  AP+   +
Sbjct: 66 NGIKRDDVVLAPLFADI 82


>AT5G61390.1 | Symbols:  | exonuclease family protein |
          chr5:24678802-24680857 REVERSE
          Length = 487

 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 37/71 (52%), Positives = 58/71 (81%)

Query: 10 TEIVFFDLETTVPNRIGQKFWVLEFGAIIVCPRKLVELESFSTLIRPKDLSVVALKSSRS 69
          +EI FFD+ETT+P R+GQ + +LEFG+I+VCP+KLVEL+++S L+RP +L+++  +S + 
Sbjct: 14 SEIAFFDVETTIPFRVGQGYAILEFGSILVCPKKLVELKNYSVLVRPANLNLITPRSVKC 73

Query: 70 DGITREAVANA 80
          +GI RE V +A
Sbjct: 74 NGIKREDVESA 84