Jatropha Genome Database

JcCA0155261.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0155261.10 + phase: 0 
         (371 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G39820.1 | Symbols:  | binding | chr4:18476698-18477924 REVERSE    493   e-140

>AT4G39820.1 | Symbols:  | binding | chr4:18476698-18477924 REVERSE
          Length = 408

 Score =  493 bits (1270), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 234/379 (61%), Positives = 308/379 (81%), Gaps = 13/379 (3%)

Query: 3   ADTTDT-QPEPVSLSSDPLSN-------QFGSLNDLAHELASLQDLANRGSWRSILDKVA 54
           A++TD  +P    L+S  +++       +F SL++L H+L SL +L+ RGSW++IL+K++
Sbjct: 33  AESTDAGEPTAFELASSQVTSVADLPPERFNSLDELTHDLGSLHELSTRGSWQAILEKIS 92

Query: 55  RARSLALLTTPHDHLTYLAYNVLAFVKLRRFKDALTELDSVDDFDSHHYRYETYPKIYPH 114
           +AR+L LLT PH+HLTYL Y V+A  KLRR  +A  EL+S+ DFD  HYRYE++P+IYP+
Sbjct: 93  QARALFLLTKPHEHLTYLTYQVMALAKLRRSDEASHELNSLHDFDGTHYRYESFPEIYPN 152

Query: 115 RHGSMVPFSLRWLHAVIPLKLGNRQEGLDRFYILLDFVRGKLKEK--QGFDFSSKIWRNR 172
           R GSMVPFSLRWL+A+IP KLGNRQEGLDR Y+LLDFVR +++EK  Q  + S ++W+ R
Sbjct: 153 RRGSMVPFSLRWLYALIPTKLGNRQEGLDRLYVLLDFVRDRIREKESQSLESSVELWKKR 212

Query: 173 EVFVMNWIISEHLKNKEFTICLDLIKDLVSRGNFDPVLLSKLGCIQMQIGDLEGAKGSFE 232
           E FVMN ++  HL +KEF + LDL+K+L++R   DPVL+SKLG +QMQ GD+EGAK +F+
Sbjct: 213 ETFVMNCLLGFHLGHKEFGVSLDLMKELINRDPLDPVLISKLGSVQMQFGDVEGAKTTFD 272

Query: 233 KVEKLLEERIAGGSDESLSEVEFRNLVNRNKALVYLVGKDYVSAVREYEECIDRDPMDVV 292
           +VEK+L E   G S+  L+E++F NLV RNKALVY+V KDYVSAVREY++CI+RD  D++
Sbjct: 273 RVEKMLNE---GKSNGLLNEIQFNNLVGRNKALVYVVAKDYVSAVREYDKCIERDNSDII 329

Query: 293 AINNKALCLMYLRDLSDSIKVLENSLERVPTVALNETLVVNLCSMYELAYVNHSDIKRTL 352
           A+NNKALCLMYLRDLSD+IKV+E++LERVPT ALNE+LVVNLCSMYELAYVNH+D+KRTL
Sbjct: 330 AVNNKALCLMYLRDLSDAIKVMESALERVPTAALNESLVVNLCSMYELAYVNHTDVKRTL 389

Query: 353 SNWIARVAPDDFDSSSTRI 371
           +NWIARVAPDDFDSS TR+
Sbjct: 390 NNWIARVAPDDFDSSCTRV 408