Jatropha Genome Database

JcCA0155101.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0155101.20 - phase: 0 
         (153 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G67090.1 | Symbols: RBCS1A | RBCS1A (RIBULOSE BISPHOSPHATE CA...   261   1e-70
AT5G38410.1 | Symbols:  | ribulose bisphosphate carboxylase smal...   260   2e-70
AT5G38420.1 | Symbols:  | ribulose bisphosphate carboxylase smal...   259   6e-70
AT5G38430.1 | Symbols:  | ribulose bisphosphate carboxylase smal...   258   1e-69
AT5G38410.3 | Symbols:  | ribulose bisphosphate carboxylase smal...   254   1e-68
AT5G38410.2 | Symbols:  | ribulose bisphosphate carboxylase smal...   243   2e-65
AT1G67090.2 | Symbols: RBCS1A | RBCS1A (RIBULOSE BISPHOSPHATE CA...   125   8e-30

>AT1G67090.1 | Symbols: RBCS1A | RBCS1A (RIBULOSE BISPHOSPHATE
           CARBOXYLASE SMALL CHAIN 1A); copper ion binding /
           ribulose-bisphosphate carboxylase |
           chr1:25048465-25049249 REVERSE
          Length = 180

 Score =  261 bits (666), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 119/153 (77%), Positives = 132/153 (86%)

Query: 1   MVAPFTGLKSTSAFSVTRKNNTDITSISSKGGRVQCMQVWPPVGKKFFETLSYLPPLSQD 60
           MVAPF GLKS++AF  TRK N DITSI+S GGRV CMQVWPP+GKK FETLSYLP L+  
Sbjct: 20  MVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPDLTDS 79

Query: 61  QLAKEVHYLLRMDRVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSAQVL 120
           +LAKEV YL+R   +PC+EFELEHGFVYRE+  SPGYYDGRYWTMWKLP+FGCTDSAQVL
Sbjct: 80  ELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTDSAQVL 139

Query: 121 KELEEAKTAYPNSFIRIIGFDNKRQVQCISFIA 153
           KE+EE K  YPN+FIRIIGFDN RQVQCISFIA
Sbjct: 140 KEVEECKKEYPNAFIRIIGFDNTRQVQCISFIA 172


>AT5G38410.1 | Symbols:  | ribulose bisphosphate carboxylase small
           chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) |
           chr5:15377501-15378306 REVERSE
          Length = 181

 Score =  260 bits (665), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 120/153 (78%), Positives = 133/153 (86%)

Query: 1   MVAPFTGLKSTSAFSVTRKNNTDITSISSKGGRVQCMQVWPPVGKKFFETLSYLPPLSQD 60
           MVAPFTGLKS++AF VTRK N DITSI+S GGRV CM+VWPP+GKK FETLSYLP LS  
Sbjct: 20  MVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCMKVWPPIGKKKFETLSYLPDLSDV 79

Query: 61  QLAKEVHYLLRMDRVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSAQVL 120
           +LAKEV YLLR   +PC+EFELEHGFVYRE+  +PGYYDGRYWTMWKLP+FGCTDSAQVL
Sbjct: 80  ELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVL 139

Query: 121 KELEEAKTAYPNSFIRIIGFDNKRQVQCISFIA 153
           KE+EE K  YP +FIRIIGFDN RQVQCISFIA
Sbjct: 140 KEVEECKKEYPGAFIRIIGFDNTRQVQCISFIA 172


>AT5G38420.1 | Symbols:  | ribulose bisphosphate carboxylase small
           chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) |
           chr5:15381203-15381978 REVERSE
          Length = 181

 Score =  259 bits (661), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 119/153 (77%), Positives = 133/153 (86%)

Query: 1   MVAPFTGLKSTSAFSVTRKNNTDITSISSKGGRVQCMQVWPPVGKKFFETLSYLPPLSQD 60
           MVAPFTGLKS+++F VTRK N DITSI+S GGRV CM+VWPP+GKK FETLSYLP LS  
Sbjct: 20  MVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWPPIGKKKFETLSYLPDLSDV 79

Query: 61  QLAKEVHYLLRMDRVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSAQVL 120
           +LAKEV YLLR   +PC+EFELEHGFVYRE+  +PGYYDGRYWTMWKLP+FGCTDSAQVL
Sbjct: 80  ELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVL 139

Query: 121 KELEEAKTAYPNSFIRIIGFDNKRQVQCISFIA 153
           KE+EE K  YP +FIRIIGFDN RQVQCISFIA
Sbjct: 140 KEVEECKKEYPGAFIRIIGFDNTRQVQCISFIA 172


>AT5G38430.1 | Symbols:  | ribulose bisphosphate carboxylase small
           chain 1B / RuBisCO small subunit 1B (RBCS-1B) (ATS1B) |
           chr5:15384350-15385155 REVERSE
          Length = 181

 Score =  258 bits (659), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 118/153 (77%), Positives = 133/153 (86%)

Query: 1   MVAPFTGLKSTSAFSVTRKNNTDITSISSKGGRVQCMQVWPPVGKKFFETLSYLPPLSQD 60
           MVAPFTGLKS+++F VTRK N DITSI+S GGRV CM+VWPP+GKK FETLSYLP L+  
Sbjct: 20  MVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWPPIGKKKFETLSYLPDLTDV 79

Query: 61  QLAKEVHYLLRMDRVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSAQVL 120
           +LAKEV YLLR   +PC+EFELEHGFVYRE+  +PGYYDGRYWTMWKLP+FGCTDSAQVL
Sbjct: 80  ELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVL 139

Query: 121 KELEEAKTAYPNSFIRIIGFDNKRQVQCISFIA 153
           KE+EE K  YP +FIRIIGFDN RQVQCISFIA
Sbjct: 140 KEVEECKKEYPGAFIRIIGFDNTRQVQCISFIA 172


>AT5G38410.3 | Symbols:  | ribulose bisphosphate carboxylase small
           chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) |
           chr5:15377501-15378306 REVERSE
          Length = 186

 Score =  254 bits (650), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 120/158 (75%), Positives = 133/158 (84%), Gaps = 5/158 (3%)

Query: 1   MVAPFTGLKSTSAFSVTRKNNTDITSISSKGGRVQCMQVWPPVGKKFFETLSYLPPLSQD 60
           MVAPFTGLKS++AF VTRK N DITSI+S GGRV CM+VWPP+GKK FETLSYLP LS  
Sbjct: 20  MVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCMKVWPPIGKKKFETLSYLPDLSDV 79

Query: 61  QLAKEVHYLLRMDRVPCLEFELE-----HGFVYRENHRSPGYYDGRYWTMWKLPMFGCTD 115
           +LAKEV YLLR   +PC+EFELE     HGFVYRE+  +PGYYDGRYWTMWKLP+FGCTD
Sbjct: 80  ELAKEVDYLLRNKWIPCVEFELEVINTKHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTD 139

Query: 116 SAQVLKELEEAKTAYPNSFIRIIGFDNKRQVQCISFIA 153
           SAQVLKE+EE K  YP +FIRIIGFDN RQVQCISFIA
Sbjct: 140 SAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIA 177


>AT5G38410.2 | Symbols:  | ribulose bisphosphate carboxylase small
           chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) |
           chr5:15377501-15378306 REVERSE
          Length = 174

 Score =  243 bits (621), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 115/153 (75%), Positives = 127/153 (83%), Gaps = 7/153 (4%)

Query: 1   MVAPFTGLKSTSAFSVTRKNNTDITSISSKGGRVQCMQVWPPVGKKFFETLSYLPPLSQD 60
           MVAPFTGLKS++AF VTRK N DITSI+S GGRV CM+VWPP+GKK FETLSYLP LS  
Sbjct: 20  MVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCMKVWPPIGKKKFETLSYLPDLSDV 79

Query: 61  QLAKEVHYLLRMDRVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSAQVL 120
           +LAKEV YLLR   +PC+EFELEHG        +PGYYDGRYWTMWKLP+FGCTDSAQVL
Sbjct: 80  ELAKEVDYLLRNKWIPCVEFELEHG-------NTPGYYDGRYWTMWKLPLFGCTDSAQVL 132

Query: 121 KELEEAKTAYPNSFIRIIGFDNKRQVQCISFIA 153
           KE+EE K  YP +FIRIIGFDN RQVQCISFIA
Sbjct: 133 KEVEECKKEYPGAFIRIIGFDNTRQVQCISFIA 165


>AT1G67090.2 | Symbols: RBCS1A | RBCS1A (RIBULOSE BISPHOSPHATE
           CARBOXYLASE SMALL CHAIN 1A); copper ion binding /
           ribulose-bisphosphate carboxylase |
           chr1:25048590-25049249 REVERSE
          Length = 136

 Score =  125 bits (315), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 58/92 (63%), Positives = 69/92 (75%)

Query: 1   MVAPFTGLKSTSAFSVTRKNNTDITSISSKGGRVQCMQVWPPVGKKFFETLSYLPPLSQD 60
           MVAPF GLKS++AF  TRK N DITSI+S GGRV CMQVWPP+GKK FETLSYLP L+  
Sbjct: 20  MVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPDLTDS 79

Query: 61  QLAKEVHYLLRMDRVPCLEFELEHGFVYRENH 92
           +LAKEV YL+R   +PC+EF+ +   V    H
Sbjct: 80  ELAKEVDYLIRNKWIPCVEFDTDLCTVSTVTH 111