Jatropha Genome Database

JcCA0155091.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0155091.30 - phase: 1 /TE
         (1237 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G48050.1 | Symbols:  | unknown protein | chr5:19472661-194737...    64   5e-10
AT1G34070.1 | Symbols:  | unknown protein | chr1:12402283-124032...    59   3e-08

>AT5G48050.1 | Symbols:  | unknown protein | chr5:19472661-19473770
           REVERSE
          Length = 369

 Score = 64.3 bits (155), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 86/190 (45%), Gaps = 14/190 (7%)

Query: 9   FVTLKLTQNNYLLWREQVLGLAESQDLTEHITEEPPMNPAGSDKATDQAIQNFTTWKKAD 68
           FVTL L + NY +WRE    L  S  +  HI         GS   T    +    WK+ D
Sbjct: 23  FVTLDLNKLNYDVWRELFETLCLSFGVLGHID--------GSSTPTPMTEKR---WKERD 71

Query: 69  RLLRGWIIGTLSEESLGLVIGLD-TAFAVWNGLKESYSQVSQEREFTLCQQLTYLRKDET 127
            L++ WI GT+++  L  +I +  TA  +W  L+  +    + R      +L     D+ 
Sbjct: 72  GLVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTTTIDD- 130

Query: 128 VPITTHIRQFKNICDSLAAIGRPISKKEKIYSLLTSLGPQYETFTTTML-KPPTPSYTEL 186
           + +  + ++ K++ D L  +  PIS +  +  LL  L  +Y+     +  K P PS+TE 
Sbjct: 131 LSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPFPSFTEA 190

Query: 187 ISQLQNHDQR 196
            S L   + R
Sbjct: 191 RSMLLMEESR 200


>AT1G34070.1 | Symbols:  | unknown protein | chr1:12402283-12403209
           FORWARD
          Length = 308

 Score = 58.5 bits (140), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 80/189 (42%), Gaps = 14/189 (7%)

Query: 10  VTLKLTQNNYLLWREQVLGLAESQDLTEHITEEPPMNPAGSDKATDQAIQNFTTWKKADR 69
           V L + ++NY  WRE  L    S D+  HI           D        N   W+K D 
Sbjct: 22  VMLDIEESNYDAWRELFLTHCLSFDVMGHI-----------DGTLLPTNANDVNWQKRDG 70

Query: 70  LLRGWIIGTLSEESL-GLVIGLDTAFAVWNGLKESYSQVSQEREFTLCQQLTYLRKDETV 128
           +++  + GTL+ +   G  +   T+  +W  +K  +      R   L  +L   +    +
Sbjct: 71  IVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELR-TKDIGDM 129

Query: 129 PITTHIRQFKNICDSLAAIGRPISKKEKIYSLLTSLGPQYETFTTTML-KPPTPSYTELI 187
            +  + R+ K + DSL  +  P++ +  +  +L  L P+++     +  + P PS+ +  
Sbjct: 130 RVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIKHRQPFPSFDDAA 189

Query: 188 SQLQNHDQR 196
           + LQ  + R
Sbjct: 190 TMLQEEEDR 198