Jatropha Genome Database

JcCA0155011.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0155011.10 - phase: 2 /partial
         (110 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G27100.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   127   2e-30
AT3G27100.2 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    97   2e-21

>AT3G27100.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           chloroplast envelope; EXPRESSED IN: 23 plant structures;
           EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
           DOMAIN/s: Transcription factor, enhancer of yellow 2
           (InterPro:IPR018783); Has 197 Blast hits to 197 proteins
           in 62 species: Archae - 0; Bacteria - 0; Metazoa - 152;
           Fungi - 8; Plants - 24; Viruses - 0; Other Eukaryotes -
           13 (source: NCBI BLink). | chr3:9994743-9995923 REVERSE
          Length = 115

 Score =  127 bits (318), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/114 (56%), Positives = 83/114 (72%), Gaps = 4/114 (3%)

Query: 1   RNSVNRPPTPD---AAEDPGKEP-SLQEIINIKLIESGXXXXXXXXXXXXXIECGWKDEM 56
           ++SVNRPPTPD    A+   K+  +L+EIIN+KL+ESG             +ECGWKDEM
Sbjct: 2   KHSVNRPPTPDEDDVADGFEKDKVTLREIINVKLVESGEKENLMELVRDRLVECGWKDEM 61

Query: 57  KALCRAFIKKKGRNNVTVDDLVHVITPKGRASIPDSIKAELLQRIRAFLVQAAV 110
           +  CR  +KKKGR +VTVD+L+ VITPKGRAS+PDS+KAELL RI+ F+V AA+
Sbjct: 62  RIACREHVKKKGRKDVTVDELIRVITPKGRASVPDSVKAELLNRIQNFIVSAAL 115


>AT3G27100.2 | Symbols:  | FUNCTIONS IN: molecular_function
          unknown; INVOLVED IN: biological_process unknown;
          EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
          growth stages; CONTAINS InterPro DOMAIN/s:
          Transcription factor, enhancer of yellow 2
          (InterPro:IPR018783); Has 157 Blast hits to 157
          proteins in 56 species: Archae - 0; Bacteria - 0;
          Metazoa - 121; Fungi - 0; Plants - 24; Viruses - 0;
          Other Eukaryotes - 12 (source: NCBI BLink). |
          chr3:9994732-9995923 REVERSE
          Length = 151

 Score = 97.1 bits (240), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 49/95 (51%), Positives = 64/95 (67%), Gaps = 4/95 (4%)

Query: 1  RNSVNRPPTPD---AAEDPGKEP-SLQEIINIKLIESGXXXXXXXXXXXXXIECGWKDEM 56
          ++SVNRPPTPD    A+   K+  +L+EIIN+KL+ESG             +ECGWKDEM
Sbjct: 2  KHSVNRPPTPDEDDVADGFEKDKVTLREIINVKLVESGEKENLMELVRDRLVECGWKDEM 61

Query: 57 KALCRAFIKKKGRNNVTVDDLVHVITPKGRASIPD 91
          +  CR  +KKKGR +VTVD+L+ VITPKGR  I +
Sbjct: 62 RIACREHVKKKGRKDVTVDELIRVITPKGRGKIYN 96