Jatropha Genome Database

JcCA0155001.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0155001.10 + phase: 0 /partial/short
         (39 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G04690.1 | Symbols: KAB1, KV-BETA1 | KAB1 (POTASSIUM CHANNEL ...    69   8e-13

>AT1G04690.1 | Symbols: KAB1, KV-BETA1 | KAB1 (POTASSIUM CHANNEL
           BETA SUBUNIT); oxidoreductase/ potassium channel |
           chr1:1313662-1315420 FORWARD
          Length = 328

 Score = 68.6 bits (166), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 29/38 (76%), Positives = 35/38 (92%)

Query: 2   QIHENMKAIDVIPLLTPAVMEKIEAVVQTKPKRPDSYR 39
           QI ENMKA+DVIPLLTP V++KIE V+Q+KPKRP+SYR
Sbjct: 291 QIQENMKAVDVIPLLTPIVLDKIEQVIQSKPKRPESYR 328