Jatropha Genome Database

JcCA0154851.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154851.30 + phase: 0 /partial
         (112 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G01410.2 | Symbols:  | RNase H domain-containing protein | ch...   150   1e-37
AT3G01410.1 | Symbols:  | RNase H domain-containing protein | ch...   150   1e-37
AT1G24090.1 | Symbols:  | RNase H domain-containing protein | ch...   118   9e-28
AT5G51080.2 | Symbols:  | RNase H domain-containing protein | ch...   109   3e-25
AT5G51080.1 | Symbols:  | RNase H domain-containing protein | ch...   109   3e-25
AT5G51080.3 | Symbols:  | RNase H domain-containing protein | ch...   109   4e-25

>AT3G01410.2 | Symbols:  | RNase H domain-containing protein |
           chr3:153650-155439 REVERSE
          Length = 294

 Score =  150 bits (379), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 67/108 (62%), Positives = 90/108 (83%)

Query: 1   MEDEKDAFYVVRKGDIVGIYKSLSDCQAQAGSSVCDPSVTVFKGYGLPKEAEEHLLSHGL 60
           MEDEKDAFY+VRKGDI+G+Y+SLS+CQ QAGSSV  P+++V+KGYG PK AE+ L S G+
Sbjct: 5   MEDEKDAFYIVRKGDIIGVYRSLSECQGQAGSSVSHPAMSVYKGYGWPKGAEDLLSSFGI 64

Query: 61  KNATYSIHAVDVQKDLFGKIVPCPFQQPNSSGGKALDYYSPPQRLQDV 108
           KNA +S++A  V+ D FGK++PCP QQP+SS G++L+  SP +RLQD+
Sbjct: 65  KNALFSVNASHVKDDAFGKLIPCPVQQPSSSQGESLNKSSPSKRLQDM 112


>AT3G01410.1 | Symbols:  | RNase H domain-containing protein |
           chr3:153650-155439 REVERSE
          Length = 294

 Score =  150 bits (379), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 67/108 (62%), Positives = 90/108 (83%)

Query: 1   MEDEKDAFYVVRKGDIVGIYKSLSDCQAQAGSSVCDPSVTVFKGYGLPKEAEEHLLSHGL 60
           MEDEKDAFY+VRKGDI+G+Y+SLS+CQ QAGSSV  P+++V+KGYG PK AE+ L S G+
Sbjct: 5   MEDEKDAFYIVRKGDIIGVYRSLSECQGQAGSSVSHPAMSVYKGYGWPKGAEDLLSSFGI 64

Query: 61  KNATYSIHAVDVQKDLFGKIVPCPFQQPNSSGGKALDYYSPPQRLQDV 108
           KNA +S++A  V+ D FGK++PCP QQP+SS G++L+  SP +RLQD+
Sbjct: 65  KNALFSVNASHVKDDAFGKLIPCPVQQPSSSQGESLNKSSPSKRLQDM 112


>AT1G24090.1 | Symbols:  | RNase H domain-containing protein |
           chr1:8520834-8524690 FORWARD
          Length = 535

 Score =  118 bits (295), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 54/88 (61%), Positives = 69/88 (78%)

Query: 1   MEDEKDAFYVVRKGDIVGIYKSLSDCQAQAGSSVCDPSVTVFKGYGLPKEAEEHLLSHGL 60
           ++ EKDAF+VVRKGD++GIYK LSDCQAQ GSSV D  V+V+KGY LPK+ EE+L S GL
Sbjct: 77  VDKEKDAFFVVRKGDVIGIYKDLSDCQAQVGSSVFDLPVSVYKGYSLPKDTEEYLSSVGL 136

Query: 61  KNATYSIHAVDVQKDLFGKIVPCPFQQP 88
           K   YS+ A D++ D+FG + PC FQ+P
Sbjct: 137 KKPLYSLRASDLKDDMFGALTPCLFQEP 164


>AT5G51080.2 | Symbols:  | RNase H domain-containing protein |
           chr5:20769022-20770675 REVERSE
          Length = 322

 Score =  109 bits (272), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 52/83 (62%), Positives = 63/83 (75%)

Query: 4   EKDAFYVVRKGDIVGIYKSLSDCQAQAGSSVCDPSVTVFKGYGLPKEAEEHLLSHGLKNA 63
           EKDAF+VVRKGDIVGIYK L DCQAQ GSSV DP V+V+KGY L K+ EE L + GLK  
Sbjct: 77  EKDAFFVVRKGDIVGIYKDLIDCQAQVGSSVYDPPVSVYKGYSLLKDTEECLSTVGLKKP 136

Query: 64  TYSIHAVDVQKDLFGKIVPCPFQ 86
            Y   A+D+++D+FG + PC FQ
Sbjct: 137 LYVFRALDLKEDMFGALTPCLFQ 159


>AT5G51080.1 | Symbols:  | RNase H domain-containing protein |
           chr5:20769022-20770675 REVERSE
          Length = 322

 Score =  109 bits (272), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 52/83 (62%), Positives = 63/83 (75%)

Query: 4   EKDAFYVVRKGDIVGIYKSLSDCQAQAGSSVCDPSVTVFKGYGLPKEAEEHLLSHGLKNA 63
           EKDAF+VVRKGDIVGIYK L DCQAQ GSSV DP V+V+KGY L K+ EE L + GLK  
Sbjct: 77  EKDAFFVVRKGDIVGIYKDLIDCQAQVGSSVYDPPVSVYKGYSLLKDTEECLSTVGLKKP 136

Query: 64  TYSIHAVDVQKDLFGKIVPCPFQ 86
            Y   A+D+++D+FG + PC FQ
Sbjct: 137 LYVFRALDLKEDMFGALTPCLFQ 159


>AT5G51080.3 | Symbols:  | RNase H domain-containing protein |
          chr5:20769022-20770486 REVERSE
          Length = 259

 Score =  109 bits (272), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 52/83 (62%), Positives = 63/83 (75%)

Query: 4  EKDAFYVVRKGDIVGIYKSLSDCQAQAGSSVCDPSVTVFKGYGLPKEAEEHLLSHGLKNA 63
          EKDAF+VVRKGDIVGIYK L DCQAQ GSSV DP V+V+KGY L K+ EE L + GLK  
Sbjct: 14 EKDAFFVVRKGDIVGIYKDLIDCQAQVGSSVYDPPVSVYKGYSLLKDTEECLSTVGLKKP 73

Query: 64 TYSIHAVDVQKDLFGKIVPCPFQ 86
           Y   A+D+++D+FG + PC FQ
Sbjct: 74 LYVFRALDLKEDMFGALTPCLFQ 96