Jatropha Genome Database

JcCA0154831.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154831.20 - phase: 2 /TE
         (283 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G23160.1 | Symbols:  | protein kinase family protein | chr4:1...    54   9e-08

>AT4G23160.1 | Symbols:  | protein kinase family protein |
           chr4:12129485-12134086 FORWARD
          Length = 1262

 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 97/234 (41%), Gaps = 37/234 (15%)

Query: 22  SQGIFLSQRKYVLDLLAXDRNAXTXACRHT---YSPKQCFDX-TNRSYINKQ-------R 70
           + GI + QRKY LDLL  D       C+ +     P   F   +   +++ +       R
Sbjct: 328 AAGINICQRKYALDLL--DETGLL-GCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGR 384

Query: 71  DTILSHTQPNIAYFVRLASQFMHNQSEEP-------VNDVFRTVKILSREGDHVXEVXSF 123
              L  T+ +I++ V   SQF    SE P       V  +   +K    +G         
Sbjct: 385 LMYLQITRLDISFAVNKLSQF----SEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEM 440

Query: 124 KYSGYFDVEWAGSISDRKSISGYFTFMGNNLITX-----EIRSKMXLLYVLLTPNLGACE 178
           +   + D  +      R+S +GY  F+G +LI+      ++ SK          +    E
Sbjct: 441 QLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDE 500

Query: 179 LIWLKELMEEIDYPFDEEIKLFCNNKAALQ-------HHRTKHVEVDRHFIKEK 225
           ++WL +   E+  P  +   LFC+N AA+        H RTKH+E D H ++E+
Sbjct: 501 MMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRER 554