Jatropha Genome Database

JcCA0154801.50
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154801.50 - phase: 2 /partial
         (90 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G23340.1 | Symbols:  | INVOLVED IN: biological_process unknow...   132   4e-32

>AT5G23340.1 | Symbols:  | INVOLVED IN: biological_process unknown;
           LOCATED IN: cellular_component unknown; EXPRESSED IN: 24
           plant structures; EXPRESSED DURING: 15 growth stages;
           CONTAINS InterPro DOMAIN/s: Leucine-rich repeat,
           cysteine-containing subtype (InterPro:IPR006553); BEST
           Arabidopsis thaliana protein match is: F-box family
           protein (FBL4) (TAIR:AT4G15475.1); Has 9095 Blast hits
           to 3545 proteins in 210 species: Archae - 0; Bacteria -
           454; Metazoa - 4575; Fungi - 774; Plants - 2118; Viruses
           - 15; Other Eukaryotes - 1159 (source: NCBI BLink). |
           chr5:7856314-7857983 FORWARD
          Length = 405

 Score =  132 bits (332), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 63/90 (70%), Positives = 75/90 (83%), Gaps = 1/90 (1%)

Query: 1   CCEEITDAAFQGLATIKTELGLKILKVSNCPKITVTGIGMLLEKCNGLEYLDVRSCPHVT 60
           CCEE+TD AF+ L +    LGLK+LKVSNC KITVTGIG LL+KC+ LEY+DVRS PHVT
Sbjct: 317 CCEEVTDTAFRDLGSDDV-LGLKVLKVSNCTKITVTGIGKLLDKCSSLEYIDVRSLPHVT 375

Query: 61  KSGCDEAGLQFPKCCKVNYTGSLNEPDVLV 90
           +  C EAGL+FPKCCKVN++GSL EPDVL+
Sbjct: 376 EVRCSEAGLEFPKCCKVNFSGSLTEPDVLL 405