Jatropha Genome Database

JcCA0154801.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154801.30 + phase: 0 
         (68 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G08350.1 | Symbols:  | GRAM domain-containing protein / ABA-r...    49   5e-07
AT5G23370.1 | Symbols:  | GRAM domain-containing protein / ABA-r...    48   2e-06
AT5G23350.1 | Symbols:  | GRAM domain-containing protein / ABA-r...    47   3e-06

>AT5G08350.1 | Symbols:  | GRAM domain-containing protein /
           ABA-responsive protein-related | chr5:2686417-2687175
           REVERSE
          Length = 222

 Score = 49.3 bits (116), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 6/57 (10%)

Query: 6   KKAENFAQVVREH------VGATCKRKVNLGDKILQVGAVQKIFRQLFRVKEEEKLL 56
           KK + F   VR+       +  T KRK++LG +ILQVG ++KIF++LFRV E EKL 
Sbjct: 54  KKTDGFTNGVRDQSKIRPKLTETVKRKLSLGARILQVGGLEKIFKRLFRVSEGEKLF 110


>AT5G23370.1 | Symbols:  | GRAM domain-containing protein /
           ABA-responsive protein-related | chr5:7863542-7864201
           REVERSE
          Length = 219

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 39/57 (68%), Gaps = 6/57 (10%)

Query: 6   KKAENFAQVVREH------VGATCKRKVNLGDKILQVGAVQKIFRQLFRVKEEEKLL 56
           KK ++F   VR+       +  T KRK++LG +ILQ+G ++KI+++LF+V +EEKL 
Sbjct: 55  KKNDSFTNGVRDQDKLGPKLTETVKRKLSLGARILQMGGLEKIYKRLFKVSDEEKLF 111


>AT5G23350.1 | Symbols:  | GRAM domain-containing protein /
           ABA-responsive protein-related | chr5:7858545-7859387
           REVERSE
          Length = 280

 Score = 46.6 bits (109), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 38/57 (66%), Gaps = 6/57 (10%)

Query: 6   KKAENFAQVVREH------VGATCKRKVNLGDKILQVGAVQKIFRQLFRVKEEEKLL 56
           KK ++F    R+       +  T KRK++LG KILQ+G ++KI+++LF+V ++EKL 
Sbjct: 117 KKTDSFTNGARDQDKLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDQEKLF 173