Jatropha Genome Database

JcCA0154771.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154771.20 - phase: 0 
         (175 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G05000.1 | Symbols:  | transport protein particle (TRAPP) com...   305   7e-84

>AT3G05000.1 | Symbols:  | transport protein particle (TRAPP)
           component Bet3 family protein | chr3:1387444-1388697
           REVERSE
          Length = 173

 Score =  305 bits (782), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 141/175 (80%), Positives = 159/175 (90%), Gaps = 2/175 (1%)

Query: 1   MGREVSESCVDSLLTEMVSSYCNRFDANKPELAGRRIEAIGYQVGHQLAERYTMERPRFS 60
           MGREV+ESCVD++L EMV+ Y  RF ANKPELA RRIEAIGYQVGHQL+ERYTMERPRFS
Sbjct: 1   MGREVAESCVDTMLMEMVAMYSGRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFS 60

Query: 61  DHLEAIKFICKDFWSEVFKKQIDNLKTNHRGTFVLQDNRFRWLARMSVDPTIESGGASQD 120
           DHLEAIKFICKDFWSEVFKKQIDNLKTNHRGTFVLQDN+FRWL+R+S+DP+ E+   +QD
Sbjct: 61  DHLEAIKFICKDFWSEVFKKQIDNLKTNHRGTFVLQDNKFRWLSRVSIDPSSEN--ETQD 118

Query: 121 PSALAENKATQAMSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 175
           PS   E+KA QA+SM+LYFPCGIIRG LSNLGIPCAVSADIS+LP CSFV+R+KA
Sbjct: 119 PSTPGESKAAQAVSMYLYFPCGIIRGVLSNLGIPCAVSADISSLPTCSFVIRVKA 173