Jatropha Genome Database

JcCA0154641.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154641.10 - phase: 0 
         (129 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G25330.1 | Symbols:  | unknown protein | chr4:12957834-129586...    67   2e-12

>AT4G25330.1 | Symbols:  | unknown protein | chr4:12957834-12958683
           FORWARD
          Length = 229

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 51/81 (62%)

Query: 18  DVEYRAIADDAWYSVRTVLNGEKLTVKYDNFSDENDSIFEPQNFKSVAEIEDFEKRFRPI 77
           ++E+R+  D+AWY+V      + L + ++ FS E+D  +   +FK+  EI++FE+RFR  
Sbjct: 35  ELEFRSAEDEAWYAVEFSDICDALWISFNGFSYEHDEFYPADDFKNSDEIQEFEERFRAC 94

Query: 78  SIQLQDRECKNVPNGAVVCAS 98
           S Q+QD EC  V  G  VCA+
Sbjct: 95  SEQMQDIECPKVHEGTQVCAT 115