Jatropha Genome Database

JcCA0154561.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154561.10 + phase: 0 
         (200 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G36940.1 | Symbols:  | unknown protein | chr1:14004158-140047...   109   1e-24

>AT1G36940.1 | Symbols:  | unknown protein | chr1:14004158-14004706
           FORWARD
          Length = 182

 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/172 (42%), Positives = 93/172 (54%), Gaps = 19/172 (11%)

Query: 9   QNFQLYHKSTFLPMLCSRPSIKDVCVPNKLEDRSMSFSSEPLSPKIGCMGQVKKHNKIIG 68
           QN   + + TFLPMLCSRPSIK+V +P K         ++PLSPKI C+GQVK+ NK   
Sbjct: 6   QNSVQFQRPTFLPMLCSRPSIKNVTLPAKSHQDDSYQQADPLSPKISCIGQVKRSNK--- 62

Query: 69  FPTXXXXXXXXNKITFTTRNDIPSVKYFKLKRIFSGKN-NFXXXXXXXXXXXXGLTLDGA 127
                         T T+   +   +YFKLKR+FSGKN +F            G      
Sbjct: 63  -----ITGFPTTTTTSTSITPVAQHRYFKLKRLFSGKNLSFSAPTTTTTRTSRGRIRKEE 117

Query: 128 KGMPKIEDSKENSVSINIAEMDPPLPVIKKVHKPNGAGEE--ETLWKRRSGG 177
            G  KI+        I++AE+DPPLPV+KK H   GAG++  E LWKRRSGG
Sbjct: 118 FGNKKID-------VIDVAELDPPLPVVKKTHD-GGAGDKAAENLWKRRSGG 161