Jatropha Genome Database

JcCA0154411.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154411.20 + phase: 0 
         (172 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G54980.1 | Symbols:  | integral membrane family protein | chr...   164   2e-41
AT1G17200.1 | Symbols:  | integral membrane family protein | chr...   105   1e-23
AT3G14380.1 | Symbols:  | integral membrane family protein | chr...    82   2e-16
AT4G16442.1 | Symbols:  | integral membrane family protein | chr...    64   4e-11
AT2G35760.1 | Symbols:  | integral membrane family protein | chr...    51   3e-07
AT2G36100.1 | Symbols:  | integral membrane family protein | chr...    49   2e-06
AT4G25830.1 | Symbols:  | integral membrane family protein | chr...    48   4e-06

>AT5G54980.1 | Symbols:  | integral membrane family protein |
           chr5:22315799-22316560 FORWARD
          Length = 194

 Score =  164 bits (415), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 81/165 (49%), Positives = 108/165 (65%), Gaps = 1/165 (0%)

Query: 2   APL-LKLLDSSLRFSVIPLSVASICLIVTNQQENSSYGDLKYSNLMGLKYMVCISAIGAC 60
           AP+ LK++DS LR SV+PLSVA+I L VTN + N  YG+L+Y+++MGLKYMV +SAI A 
Sbjct: 25  APMSLKIIDSCLRLSVVPLSVATIWLTVTNHESNPDYGNLEYNSIMGLKYMVGVSAISAI 84

Query: 61  YAFSAVACTWIRSLVNKVWLFFVSDQIMAYLTVTSAAALMEIVYLAYNGDQEVTWSEACN 120
           YA  +   +W+  LV+K WLFF+ DQ++AY+  TS A   EIVYL   GD+ VTWSE C+
Sbjct: 85  YALLSTVSSWVTCLVSKAWLFFIPDQVLAYVMTTSVAGATEIVYLLNKGDKIVTWSEMCS 144

Query: 121 SFGKFCHKMKXXXXXXXXXXXXXXXXXXISAYRAFSVFEPPVSSK 165
           S+  +C K+                   ISAYRAFS F+PP  S+
Sbjct: 145 SYPHYCSKLTIALGLHVFVLFFFLFLSVISAYRAFSPFDPPCDSQ 189


>AT1G17200.1 | Symbols:  | integral membrane family protein |
           chr1:5878493-5879871 FORWARD
          Length = 204

 Score =  105 bits (263), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 95/170 (55%), Gaps = 7/170 (4%)

Query: 5   LKLLDSSLRFSVIPLSVASICLIVTNQQENSSYGDLKYSNLMGLKYMVCISAIGACYAFS 64
           ++  ++ LR + + L VA++ +++ + + N  +G + YSNL   +Y+V  + I A Y+  
Sbjct: 30  IRTAETMLRLAPVGLCVAALVVMLKDSETNE-FGSISYSNLTAFRYLVHANGICAGYSLL 88

Query: 65  AVACTWI---RSLVNKVWLFFVSDQIMAYLTVTSAAALMEIVYLAYNGDQEVTWSEACNS 121
           + A   +    S + +VW FF  DQ++ YL + + A   E++YLAYNGD  +TWS+AC+S
Sbjct: 89  SAAIAAMPRSSSTMPRVWTFFCLDQLLTYLVLAAGAVSAEVLYLAYNGDSAITWSDACSS 148

Query: 122 FGKFCHKMKXXXXXXXXXXXXXXXXXXISAYRAFSVFEPPV---SSKQVE 168
           +G FCH+                    IS+Y+ F+ F+PP    S+K +E
Sbjct: 149 YGGFCHRATASVIITFFVVCFYIVLSLISSYKLFTRFDPPSIVDSAKNLE 198


>AT3G14380.1 | Symbols:  | integral membrane family protein |
           chr3:4803175-4803799 REVERSE
          Length = 178

 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 85/161 (52%), Gaps = 8/161 (4%)

Query: 6   KLLDSSLRFSVIPLSVASICLIVTNQQENSSYGDLKYSNLMGLKYMVCISAIGACYAFSA 65
           K  ++ LR + + LS+  + +++ N   N  +G + YSN+    Y+V  SA G C A+S 
Sbjct: 21  KSAEAVLRVASMALSITGLVIMIKNSISNE-FGSVSYSNIGAFMYLV--SANGVCAAYSL 77

Query: 66  VACTWIRSL---VNKVWL--FFVSDQIMAYLTVTSAAALMEIVYLAYNGDQEVTWSEACN 120
           ++   I +L   ++KV +   F+ DQ++ Y+ + + A   E VYLAY G+  +TWS AC+
Sbjct: 78  LSALAILALPCPISKVQVRTLFLLDQVVTYVVLAAGAVSAETVYLAYYGNIPITWSSACD 137

Query: 121 SFGKFCHKMKXXXXXXXXXXXXXXXXXXISAYRAFSVFEPP 161
           S+G FCH                     IS+YR F+ FE P
Sbjct: 138 SYGSFCHNALISVVFTFVVSLLYMLLSLISSYRLFTRFEAP 178


>AT4G16442.1 | Symbols:  | integral membrane family protein |
           chr4:9272042-9272970 REVERSE
          Length = 182

 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 79/165 (47%), Gaps = 12/165 (7%)

Query: 5   LKLLDSSLRFSVIPLSVASICLIVTNQQENSSY---GDLKYSNLMGLKYMVCISAIGACY 61
           ++L +  LR S+   ++ ++ L+VT+ +    +      KY+++  + ++V  + I A Y
Sbjct: 8   MRLTELLLRCSISVFALLALILVVTDTEVKLIFTIKKTAKYTDMKAVVFLVVANGIAAVY 67

Query: 62  AF-SAVACTWIRSLVNKV-------WLFFVSDQIMAYLTVTSAAALMEIVYLAYNGDQEV 113
           +   +V C  + ++  KV       W FF  DQ MAYL V + AA  E   +A  G++++
Sbjct: 68  SLLQSVRCV-VGTMKGKVLFSKPLAWAFFSGDQAMAYLNVAAIAATAESGVIAREGEEDL 126

Query: 114 TWSEACNSFGKFCHKMKXXXXXXXXXXXXXXXXXXISAYRAFSVF 158
            W   C  +GKFC++M                   ISA+  F ++
Sbjct: 127 QWMRVCTMYGKFCNQMAIGVSSALLASIAMVFVSCISAFSLFRLY 171


>AT2G35760.1 | Symbols:  | integral membrane family protein |
           chr2:15032059-15033094 FORWARD
          Length = 201

 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 76/171 (44%), Gaps = 17/171 (9%)

Query: 5   LKLLDSSLRFS-------VIPLSVASICLIVTNQQENSSY---GDLKYSNLMGLKYMVCI 54
           +KL+D  +R +       V  L++ +  LI T+ Q    +      K++++  L  +V +
Sbjct: 20  MKLIDRKVRVTELILRCLVCVLALVAAILIATDVQVREIFMIQKKAKFTDMKALVLLVVV 79

Query: 55  SAIGACYAF-SAVACT----WIRSLVNK--VWLFFVSDQIMAYLTVTSAAALMEIVYLAY 107
           + I A Y+   AV C       R L +K   W  F  DQ +AYL V   AA  +    A 
Sbjct: 80  NGIAAGYSLVQAVRCVVGLMKGRVLFSKPLAWAIFFGDQAVAYLCVAGVAAAAQSAAFAK 139

Query: 108 NGDQEVTWSEACNSFGKFCHKMKXXXXXXXXXXXXXXXXXXISAYRAFSVF 158
            G+ E+ W + CN +GKFC+++                   ISA+  F ++
Sbjct: 140 LGEPELQWMKICNMYGKFCNQVGEGIASALFACIGMVLISCISAFGVFRLY 190


>AT2G36100.1 | Symbols:  | integral membrane family protein |
           chr2:15159744-15160669 REVERSE
          Length = 206

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 11/135 (8%)

Query: 5   LKLLDSSLRFSVIPLSVASICLIVTNQQENSSYGDL-----KYSNLMGLKYMVCISAIGA 59
           L + D  LR + I +++ +  ++ T ++    +         Y +L   +Y V   A+ A
Sbjct: 45  LAIFDFLLRLAAIAVTIGAASVMYTAEETLPFFTQFLQFQAGYDDLPAFQYFVIAVAVVA 104

Query: 60  CY-----AFSAVACTWIRSLVNKVWLFFVSDQIMAYLTVTSAAALMEIVYLAYNGDQEVT 114
            Y      FS V+     ++  ++ L  + D ++  L  ++AAA   I YLA+NG+Q   
Sbjct: 105 SYLVLSLPFSIVSIVRPHAVAPRLILL-ICDTLVVTLNTSAAAAAASITYLAHNGNQSTN 163

Query: 115 WSEACNSFGKFCHKM 129
           W   C  FG FC  +
Sbjct: 164 WLPICQQFGDFCQNV 178


>AT4G25830.1 | Symbols:  | integral membrane family protein |
           chr4:13133727-13134790 FORWARD
          Length = 175

 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 61/156 (39%), Gaps = 6/156 (3%)

Query: 12  LRFSVIPLSVASICLIVTNQQENSS---YGDLKYSNLMGLKYMVCISAIGACYAFSAVAC 68
           LR  ++   + + CLI  + Q       + ++ +  L+ L+  + I  + A Y    +  
Sbjct: 11  LRLCIVFFLLLTSCLIGLDSQTKEIAYIHKNVSFRYLLALEAELYIDVVVAAYNLVQLGL 70

Query: 69  TWI---RSLVNKVWLFFVSDQIMAYLTVTSAAALMEIVYLAYNGDQEVTWSEACNSFGKF 125
            W    +   N  W  ++ DQ  AY+     +A  +   L   G +E+ W + C  F +F
Sbjct: 71  GWYNVEQKTSNPKWFSYLLDQTAAYVVFAGTSAAAQHSLLVVTGSRELQWMKWCYKFTRF 130

Query: 126 CHKMKXXXXXXXXXXXXXXXXXXISAYRAFSVFEPP 161
           C +M                   ISA+  F ++ P 
Sbjct: 131 CFQMGSAIILNYIAAALMVLLSSISAFNLFRLYSPK 166