Jatropha Genome Database

JcCA0154181.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154181.20 - phase: 0 
         (567 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58760.1 | Symbols: DDB2 | DDB2 (damaged DNA-binding 2); nucl...   777   0.0  
AT1G80710.1 | Symbols:  | transducin family protein / WD-40 repe...    77   4e-14

>AT5G58760.1 | Symbols: DDB2 | DDB2 (damaged DNA-binding 2); nucleic
           acid binding / nucleotide binding / zinc ion binding |
           chr5:23730741-23733606 REVERSE
          Length = 557

 Score =  777 bits (2007), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/451 (78%), Positives = 409/451 (90%), Gaps = 1/451 (0%)

Query: 68  SKKKGKAPITISL-KKVCKVCKKPGHEAGFKGATYIDCPMKPCFLCKMPGHTTITCPHRV 126
           +K KGKAPIT+ L KKVCKVCK+PGHEAGFKGATYIDCPMKPCFLCKMPGHTT++CPHRV
Sbjct: 60  NKAKGKAPITVKLIKKVCKVCKQPGHEAGFKGATYIDCPMKPCFLCKMPGHTTMSCPHRV 119

Query: 127 ATEYGVIPAPQRNTHNPLEYVFQRQLRPHIPPIKPPFVVPDQVCCAVIRYHSRRVTCLEF 186
            T++G++P   RNT NP+++VF+RQL+P IPPIKP +V+PDQV CAVIRYHSRRVTCLEF
Sbjct: 120 VTDHGILPTSHRNTKNPIDFVFKRQLQPRIPPIKPKYVIPDQVHCAVIRYHSRRVTCLEF 179

Query: 187 HPTKNNVLLSGDKKGQVGVWDFEKVHEKMVYGNIHTCIVNNMRFKPSNDGTVYAASSDGT 246
           HPTKNN+LLSGDKKGQ+GVWDF KV+EK VYGNIH+  VNNMRF P+ND  VY+ASSDGT
Sbjct: 180 HPTKNNILLSGDKKGQIGVWDFGKVYEKNVYGNIHSVQVNNMRFSPTNDDMVYSASSDGT 239

Query: 247 ISCTDMETGISTSLMNLNPDGWQGPSSWRMLYGMDINSEKGVVLVADNFGFLYIVDMRSN 306
           I  TD+ETG S++L+NLNPDGWQG +SW+MLYGMDINSEKGVVL ADNFGFL+++D R+N
Sbjct: 240 IGYTDLETGTSSTLLNLNPDGWQGANSWKMLYGMDINSEKGVVLAADNFGFLHMIDHRTN 299

Query: 307 SKTGQPILIHKKGSKVVGLHCNPVHPELLLSCGNDHFARIWDMRRLEAGSSLCDLVHKRV 366
           + TG+PILIHK+GSKV GL CNPV PELLLSCGNDHFARIWDMR+L+  +SL DL HKRV
Sbjct: 300 NSTGEPILIHKQGSKVCGLDCNPVQPELLLSCGNDHFARIWDMRKLQPKASLHDLAHKRV 359

Query: 367 VNCAYFSPLSGSKILTTSQDNRLRVWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPK 426
           VN AYFSP SG+KILTT QDNR+R+WDSIFGNLD PSREIVHS+DFNRHLTPF+AEWDPK
Sbjct: 360 VNSAYFSPSSGTKILTTCQDNRIRIWDSIFGNLDLPSREIVHSNDFNRHLTPFKAEWDPK 419

Query: 427 DPSESLAVIGRYISENYNGAALHPIDFIDTSNGQLVAEVMDPNITTITPVNKLHPRDDIL 486
           D SESL VIGRYISENYNG ALHPIDFID SNGQLVAEVMDPNITTITPVNKLHPRDD+L
Sbjct: 420 DTSESLIVIGRYISENYNGTALHPIDFIDASNGQLVAEVMDPNITTITPVNKLHPRDDVL 479

Query: 487 ASGSSRSLFIWKPKDKSELAEQKEDRQIVIC 517
           ASGSSRSLFIW+P+D +E+ E+K+D++I+IC
Sbjct: 480 ASGSSRSLFIWRPQDNTEMVEEKKDKKIIIC 510


>AT1G80710.1 | Symbols:  | transducin family protein / WD-40 repeat
           family protein | chr1:30333499-30335796 REVERSE
          Length = 516

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 155/336 (46%), Gaps = 50/336 (14%)

Query: 180 RVTCLEFHPTKN-NVLLSGDKKGQVGVWDF----EKVHEKMVYGNIHTCIVNNMRFKPSN 234
           R+  ++F P +N  ++ +GDK G VG W+     E+ ++ +     H+  V+++ F+ ++
Sbjct: 216 RIFVVQFLPCENVKMVAAGDKLGNVGFWNLDCGNEEDNDGIYLFTPHSAPVSSIVFQQNS 275

Query: 235 DGTVYAASSDGTISCTDMETGISTSLMNLNPDGW---QGPSSWRMLYGMDINSEKGVVLV 291
              V ++S DG I   D+E  +   + + +   +   Q P+  + LY             
Sbjct: 276 LSRVISSSYDGLIRLMDVEKSVFDLVYSTDEAIFSLSQRPNDEQSLY------------F 323

Query: 292 ADNFGFLYIVDMRSNSKTGQPIL---IHKKGSKVVGLHCNPVHPELLLSCGNDHFARIWD 348
             ++G   + D+R+    G+ +    +H++  ++  +  NP +P ++ +   D  A +WD
Sbjct: 324 GQDYGVFNVWDLRA----GKSVFHWELHER--RINSIDFNPQNPHVMATSSTDGTACLWD 377

Query: 349 MRRLEAG--SSLCDLVHKRVVNCAYFSPLSGSKILTTSQDNRLRVWDSIFGNLDSPSREI 406
           +R + A    +L  + H R V+ AYFSP SG  + TTS DN + V      N ++    +
Sbjct: 378 LRSMGAKKPKTLSTVNHSRAVHSAYFSP-SGLSLATTSLDNYIGVLSG--ANFENTC--M 432

Query: 407 VHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDTSNGQLVAEVM 466
           ++ ++ +R ++ F+A W   D          YI   Y G     ID I+    + V E+ 
Sbjct: 433 IYHNNTSRWISKFKAVWGWDDS---------YI---YVGNLSKKIDVINPKLKRTVMELH 480

Query: 467 DPNITTITPVNKLHPRDDILASGSSR--SLFIWKPK 500
           +P    I      HP +    +GS+    +++W  K
Sbjct: 481 NPLQRAIPCRIHCHPYNVGTLAGSTAGGQVYVWTTK 516