Jatropha Genome Database

JcCA0154181.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154181.10 - phase: 0 /partial
         (96 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G29940.1 | Symbols: PDR3, ATPDR3 | PDR3 (PLEIOTROPIC DRUG RES...   104   1e-23

>AT2G29940.1 | Symbols: PDR3, ATPDR3 | PDR3 (PLEIOTROPIC DRUG
          RESISTANCE 3); ATPase, coupled to transmembrane
          movement of substances | chr2:12760139-12766455 FORWARD
          Length = 1426

 Score =  104 bits (259), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 74/99 (74%), Gaps = 3/99 (3%)

Query: 1  MAAALNGTEYLEVQIDPGRESFARPSNADSVREDEAELQWQAIARLPSQKRSNF-SLLRR 59
          MAAA NG+EY E  ++ GRESFARPSNA++V +DE +L+W AI RLPSQ++    ++LRR
Sbjct: 1  MAAASNGSEYFEFDVETGRESFARPSNAETVEQDEEDLRWAAIGRLPSQRQGTHNAILRR 60

Query: 60 SSTDYSHGG--EESRMEMIDVTKLDRANRELVVRKALAT 96
          S T     G  + + ++ IDV KLDRA+RE++VR+ALAT
Sbjct: 61 SQTQTQTSGYADGNVVQTIDVKKLDRADREMLVRQALAT 99