Jatropha Genome Database

JcCA0154071.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154071.20 - phase: 0 
         (189 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G03180.1 | Symbols:  | unknown protein | chr4:1403289-1404663...    95   2e-20

>AT4G03180.1 | Symbols:  | unknown protein | chr4:1403289-1404663
           FORWARD
          Length = 185

 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/85 (58%), Positives = 59/85 (69%), Gaps = 11/85 (12%)

Query: 17  NSSASISMKKKKNMMRLGGPALSLEAFANAKSTRNKYNPALIKKQREFYKNAKYVSKFKK 76
           + S S   KK+KNM RLGG  LSL+ FAN KS  N+YNP+LIKKQ+EFYKNAKYVSKF+K
Sbjct: 13  DKSKSAETKKRKNMRRLGGGGLSLQTFANMKSENNRYNPSLIKKQKEFYKNAKYVSKFRK 72

Query: 77  KLRQQNQQTETSSVVTNLEDNNETG 101
            L+QQ           N+ D NETG
Sbjct: 73  SLKQQ-----------NIPDKNETG 86



 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 20/26 (76%), Positives = 24/26 (92%)

Query: 163 MFKKTRHGQPVMKYRIEHLLQTIQGS 188
           M +KTRHGQPVMKYRIEHLL++I+ S
Sbjct: 153 MLRKTRHGQPVMKYRIEHLLESIKKS 178