Jatropha Genome Database

JcCA0154071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154071.10 + phase: 2 /partial
         (141 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G62980.1 | Symbols: TIR1 | TIR1 (TRANSPORT INHIBITOR RESPONSE...   270   2e-73
AT4G03190.1 | Symbols: GRH1, ATGRH1, AFB1 | GRH1 (GRR1-LIKE PROT...   221   8e-59
AT3G26810.1 | Symbols: AFB2 | AFB2 (AUXIN SIGNALING F-BOX 2); au...   160   3e-40
AT1G12820.1 | Symbols: AFB3 | AFB3 (AUXIN SIGNALING F-BOX 3); au...   156   4e-39
AT5G49980.1 | Symbols: AFB5 | AFB5 (Auxin F-Box protein 5); ubiq...   129   7e-31
AT4G24390.1 | Symbols:  | F-box family protein (FBX14) | chr4:12...   117   2e-27
AT4G24390.2 | Symbols:  | F-box family protein (FBX14) | chr4:12...   117   2e-27
AT2G39940.1 | Symbols: COI1 | COI1 (CORONATINE INSENSITIVE 1); p...    76   9e-15

>AT3G62980.1 | Symbols: TIR1 | TIR1 (TRANSPORT INHIBITOR RESPONSE
           1); auxin binding / protein binding / ubiquitin-protein
           ligase | chr3:23273479-23276181 REVERSE
          Length = 594

 Score =  270 bits (691), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 123/141 (87%), Positives = 137/141 (97%)

Query: 1   DRVFEYIGTYAKKLEMLSVAFAGDSDLGLHHVMSGCENLRKLEIRDCPFGDKALLANAAK 60
           D+VFEYIGTYAKK+EMLSVAFAGDSDLG+HHV+SGC++LRKLEIRDCPFGDKALLANA+K
Sbjct: 445 DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASK 504

Query: 61  LETMRSLWMSSCSVSYGACKLLGQKMPRLNVEVIDERGPPDSRPESCPVEKLYIYRTVAG 120
           LETMRSLWMSSCSVS+GACKLLGQKMP+LNVEVIDERG PDSRPESCPVE+++IYRTVAG
Sbjct: 505 LETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPESCPVERVFIYRTVAG 564

Query: 121 PRFDMPGFVWTMDEDSALRLS 141
           PRFDMPGFVW MD+DS +R S
Sbjct: 565 PRFDMPGFVWNMDQDSTMRFS 585


>AT4G03190.1 | Symbols: GRH1, ATGRH1, AFB1 | GRH1 (GRR1-LIKE PROTEIN
           1); auxin binding / protein binding / ubiquitin-protein
           ligase | chr4:1405108-1407057 REVERSE
          Length = 585

 Score =  221 bits (564), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 103/135 (76%), Positives = 120/135 (88%), Gaps = 1/135 (0%)

Query: 1   DRVFEYIGTYAKKLEMLSVAFAGDSDLGLHHVMSGCENLRKLEIRDCPFGDKALLANAAK 60
           D+ F+YIG +AKK+ MLS+AFAGDSDL LHH++SGCE+L+KLEIRDCPFGD ALL +AAK
Sbjct: 441 DKAFKYIGKHAKKVRMLSIAFAGDSDLMLHHLLSGCESLKKLEIRDCPFGDTALLEHAAK 500

Query: 61  LETMRSLWMSSCSVSYGACKLLGQKMPRLNVEVIDERGPPDSRPESCPVEKLYIYRTVAG 120
           LETMRSLWMSSC VS+GACKLL QKMPRLNVEVIDE  PP+SRPES PVE++YIYRTVAG
Sbjct: 501 LETMRSLWMSSCFVSFGACKLLSQKMPRLNVEVIDEH-PPESRPESSPVERIYIYRTVAG 559

Query: 121 PRFDMPGFVWTMDED 135
           PR D P FVWT+ ++
Sbjct: 560 PRMDTPEFVWTIHKN 574


>AT3G26810.1 | Symbols: AFB2 | AFB2 (AUXIN SIGNALING F-BOX 2); auxin
           binding / ubiquitin-protein ligase |
           chr3:9868342-9870464 FORWARD
          Length = 575

 Score =  160 bits (404), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 77/136 (56%), Positives = 98/136 (72%), Gaps = 4/136 (2%)

Query: 1   DRVFEYIGTYAKKLEMLSVAFAGDSDLGLHHVMSGCENLRKLEIRDCPFGDKALLANAAK 60
           D+VF YIG YA +LEMLS+AFAGD+D G+ +V++GC+ ++KLEIRD PFGD ALLA+ +K
Sbjct: 440 DQVFLYIGMYANQLEMLSIAFAGDTDKGMLYVLNGCKKMKKLEIRDSPFGDTALLADVSK 499

Query: 61  LETMRSLWMSSCSVSYGACKLLGQKMPRLNVEVIDE----RGPPDSRPESCPVEKLYIYR 116
            ETMRSLWMSSC V+   CK L +K P LNVE+I+E    R   +       V+KLY+YR
Sbjct: 500 YETMRSLWMSSCEVTLSGCKRLAEKAPWLNVEIINENDNNRMEENGHEGRQKVDKLYLYR 559

Query: 117 TVAGPRFDMPGFVWTM 132
           TV G R D P FVW +
Sbjct: 560 TVVGTRMDAPPFVWIL 575


>AT1G12820.1 | Symbols: AFB3 | AFB3 (AUXIN SIGNALING F-BOX 3); auxin
           binding / ubiquitin-protein ligase |
           chr1:4368879-4370780 REVERSE
          Length = 577

 Score =  156 bits (394), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 76/133 (57%), Positives = 97/133 (72%), Gaps = 4/133 (3%)

Query: 1   DRVFEYIGTYAKKLEMLSVAFAGDSDLGLHHVMSGCENLRKLEIRDCPFGDKALLANAAK 60
           D+VF YIG YA++LEMLS+AFAGD+D G+ +V++GC+ +RKLEIRD PFG+ ALLA+  +
Sbjct: 442 DQVFLYIGMYAEQLEMLSIAFAGDTDKGMLYVLNGCKKMRKLEIRDSPFGNAALLADVGR 501

Query: 61  LETMRSLWMSSCSVSYGACKLLGQKMPRLNVEVIDERG----PPDSRPESCPVEKLYIYR 116
            ETMRSLWMSSC V+ G CK L Q  PRLNVE+I+E        +   E   V+KLY+YR
Sbjct: 502 YETMRSLWMSSCEVTLGGCKRLAQNSPRLNVEIINENENNGMEQNEEDEREKVDKLYLYR 561

Query: 117 TVAGPRFDMPGFV 129
           TV G R D P +V
Sbjct: 562 TVVGTRKDAPPYV 574


>AT5G49980.1 | Symbols: AFB5 | AFB5 (Auxin F-Box protein 5);
           ubiquitin-protein ligase | chr5:20334420-20336531
           REVERSE
          Length = 619

 Score =  129 bits (323), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 67/129 (51%), Positives = 84/129 (65%), Gaps = 3/129 (2%)

Query: 1   DRVFEYIGTYAKKLEMLSVAFAGDSDLGLHHVMSGCENLRKLEIRDCPFGDKALLANAAK 60
           D+ F Y+G Y K +  LSVAFAGDSD+ L HV+ GC  L+KLEIRD PFGD AL +   +
Sbjct: 491 DQAFRYMGEYGKLVRTLSVAFAGDSDMALRHVLEGCPRLQKLEIRDSPFGDVALRSGMHR 550

Query: 61  LETMRSLWMSSCSVSYGACKLLGQKMPRLNVEVIDERGPPDSRPESCPVEKLYIYRTVAG 120
              MR +WMS+CS+S G CK + + MP L VEVI      D+R     VE LY+YR++ G
Sbjct: 551 YYNMRFVWMSACSLSKGCCKDIARAMPNLVVEVIGSDDDDDNRDY---VETLYMYRSLDG 607

Query: 121 PRFDMPGFV 129
           PR D P FV
Sbjct: 608 PRNDAPKFV 616


>AT4G24390.1 | Symbols:  | F-box family protein (FBX14) |
           chr4:12613909-12615966 REVERSE
          Length = 623

 Score =  117 bits (294), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/130 (46%), Positives = 78/130 (60%), Gaps = 1/130 (0%)

Query: 1   DRVFEYIGTYAKKLEMLSVAFAGDSDLGLHHVMSGCENLRKLEIRDCPFGDKALLANAAK 60
           D  F YIG Y K +  LSVAFAG+SD  L +V+ GC  L+KLEIRD PFGD  L +   +
Sbjct: 491 DEAFSYIGEYGKLIRTLSVAFAGNSDKALRYVLEGCPKLQKLEIRDSPFGDVGLRSGMHR 550

Query: 61  LETMRSLWMSSCSVSYGACKLLGQKMPRLNVEVIDERGPPDSRPESCP-VEKLYIYRTVA 119
              MR +W+SSC +S G C+ +   +P + VEV    G  D    +   VE LY+YR++ 
Sbjct: 551 YSNMRFVWLSSCLISRGGCRGVSHALPNVVVEVFGADGDDDEDTVTGDYVETLYLYRSLD 610

Query: 120 GPRFDMPGFV 129
           GPR D P FV
Sbjct: 611 GPRKDAPKFV 620


>AT4G24390.2 | Symbols:  | F-box family protein (FBX14) |
           chr4:12613909-12615966 REVERSE
          Length = 623

 Score =  117 bits (294), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/130 (46%), Positives = 78/130 (60%), Gaps = 1/130 (0%)

Query: 1   DRVFEYIGTYAKKLEMLSVAFAGDSDLGLHHVMSGCENLRKLEIRDCPFGDKALLANAAK 60
           D  F YIG Y K +  LSVAFAG+SD  L +V+ GC  L+KLEIRD PFGD  L +   +
Sbjct: 491 DEAFSYIGEYGKLIRTLSVAFAGNSDKALRYVLEGCPKLQKLEIRDSPFGDVGLRSGMHR 550

Query: 61  LETMRSLWMSSCSVSYGACKLLGQKMPRLNVEVIDERGPPDSRPESCP-VEKLYIYRTVA 119
              MR +W+SSC +S G C+ +   +P + VEV    G  D    +   VE LY+YR++ 
Sbjct: 551 YSNMRFVWLSSCLISRGGCRGVSHALPNVVVEVFGADGDDDEDTVTGDYVETLYLYRSLD 610

Query: 120 GPRFDMPGFV 129
           GPR D P FV
Sbjct: 611 GPRKDAPKFV 620


>AT2G39940.1 | Symbols: COI1 | COI1 (CORONATINE INSENSITIVE 1);
           protein binding / ubiquitin-protein ligase |
           chr2:16672848-16675486 REVERSE
          Length = 592

 Score = 75.9 bits (185), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 5/139 (3%)

Query: 1   DRVFEYIGTYAKKLEMLSVAFAGDSDLGLHHVMSGCENLRKLEIRDCPFGDKALLANAAK 60
           D    YIG Y+  +  + + + G+SD GL     GC NL+KLE+R C F ++A+ A   K
Sbjct: 452 DLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK 511

Query: 61  LETMRSLWMSSCSVSYGACKLLGQKMPRLNVEVIDERGPPDSRPESCPVE-----KLYIY 115
           L ++R LW+     S     L+    P  N+E+I  R  P+   +    E      +  Y
Sbjct: 512 LPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEHPAHILAY 571

Query: 116 RTVAGPRFDMPGFVWTMDE 134
            ++AG R D P  V  + E
Sbjct: 572 YSLAGQRTDCPTTVRVLKE 590