Jatropha Genome Database
- JcCA0153841.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0153841.20 + phase: 0
(313 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G12560.2 | Symbols: | F-box family protein | chr4:7441815-74... 98 8e-21
AT4G12560.1 | Symbols: | F-box family protein | chr4:7441815-74... 98 8e-21
AT3G06240.1 | Symbols: | F-box family protein | chr3:1887336-18... 78 9e-15
AT3G16210.1 | Symbols: | F-box family protein | chr3:5494533-54... 67 2e-11
AT4G21240.1 | Symbols: | F-box family protein | chr4:11322411-1... 60 2e-09
AT3G17570.1 | Symbols: | F-box family protein | chr3:6009413-60... 57 1e-08
AT1G32600.1 | Symbols: | F-box family protein-related | chr1:11... 54 1e-07
AT1G12170.1 | Symbols: | F-box family protein | chr1:4128607-41... 49 5e-06
AT3G23880.1 | Symbols: | F-box family protein | chr3:8622061-86... 49 5e-06
AT3G17530.1 | Symbols: | F-box family protein | chr3:6000860-60... 49 6e-06
>AT4G12560.2 | Symbols: | F-box family protein |
chr4:7441815-7443157 FORWARD
Length = 413
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 97/344 (28%), Positives = 150/344 (43%), Gaps = 71/344 (20%)
Query: 4 TTPEEIVADILLKSKVKSLLRFXXXXXXXXXXXXXQDFIKSHLHR--SQGD-LSKFVCGS 60
T P +IV DI L+ K+L+R DFI+SHLHR GD L + G+
Sbjct: 3 TIPMDIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMILLRGA 62
Query: 61 -NFY--DVNNSGEAVPVESPLEQQLPFLNGENCTILCSSDGLVLLRISIDKLNHRKTKAK 117
Y D+++ VE P+++ G + SS+GL+ L S
Sbjct: 63 LRLYSVDLDSLDSVSDVEHPMKR------GGPTEVFGSSNGLIGLSNS------------ 104
Query: 118 ARAEAYSLVLWNPSTRQREVLPNPKTFAPYNT----FISYGLGYDSATNCYKVVQ----- 168
L ++NPSTRQ LP P + ++ YGLGYDS ++ YKVV+
Sbjct: 105 ----PTDLAVFNPSTRQIHRLPPSSIDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMVQFK 160
Query: 169 --------CGY-YRILVFSLESYSWRKPKD----------FGFDITFSQA-GTLTHGAFH 208
C + Y + VFSL+ SW++ + F + + + + G L + H
Sbjct: 161 IDSEDELGCSFPYEVKVFSLKKNSWKRIESVASSIQLLFYFYYHLLYRRGYGVLAGNSLH 220
Query: 209 WVAELDN---SSKIVVAFNLSDEKIVQLQLPXXXXXXXXXXXXXXEVIVLQGNLCLLESI 265
WV + ++V F+L+ E+ ++ P ++ VL G LCL+
Sbjct: 221 WVLPRRPGLIAFNLIVRFDLALEEFEIVRFPEAVANGNVDIQM--DIGVLDGCLCLM--- 275
Query: 266 RNICNGGNSPGAYLNIWVMKEYGVTESWNKFDNHHTRESILSFS 309
CN S Y+++W+MKEY V +SW K +S+ SFS
Sbjct: 276 ---CNYDQS---YVDVWMMKEYNVRDSWTKVFTVQKPKSVKSFS 313
>AT4G12560.1 | Symbols: | F-box family protein |
chr4:7441815-7443157 FORWARD
Length = 413
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 97/344 (28%), Positives = 150/344 (43%), Gaps = 71/344 (20%)
Query: 4 TTPEEIVADILLKSKVKSLLRFXXXXXXXXXXXXXQDFIKSHLHR--SQGD-LSKFVCGS 60
T P +IV DI L+ K+L+R DFI+SHLHR GD L + G+
Sbjct: 3 TIPMDIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMILLRGA 62
Query: 61 -NFY--DVNNSGEAVPVESPLEQQLPFLNGENCTILCSSDGLVLLRISIDKLNHRKTKAK 117
Y D+++ VE P+++ G + SS+GL+ L S
Sbjct: 63 LRLYSVDLDSLDSVSDVEHPMKR------GGPTEVFGSSNGLIGLSNS------------ 104
Query: 118 ARAEAYSLVLWNPSTRQREVLPNPKTFAPYNT----FISYGLGYDSATNCYKVVQ----- 168
L ++NPSTRQ LP P + ++ YGLGYDS ++ YKVV+
Sbjct: 105 ----PTDLAVFNPSTRQIHRLPPSSIDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMVQFK 160
Query: 169 --------CGY-YRILVFSLESYSWRKPKD----------FGFDITFSQA-GTLTHGAFH 208
C + Y + VFSL+ SW++ + F + + + + G L + H
Sbjct: 161 IDSEDELGCSFPYEVKVFSLKKNSWKRIESVASSIQLLFYFYYHLLYRRGYGVLAGNSLH 220
Query: 209 WVAELDN---SSKIVVAFNLSDEKIVQLQLPXXXXXXXXXXXXXXEVIVLQGNLCLLESI 265
WV + ++V F+L+ E+ ++ P ++ VL G LCL+
Sbjct: 221 WVLPRRPGLIAFNLIVRFDLALEEFEIVRFPEAVANGNVDIQM--DIGVLDGCLCLM--- 275
Query: 266 RNICNGGNSPGAYLNIWVMKEYGVTESWNKFDNHHTRESILSFS 309
CN S Y+++W+MKEY V +SW K +S+ SFS
Sbjct: 276 ---CNYDQS---YVDVWMMKEYNVRDSWTKVFTVQKPKSVKSFS 313
>AT3G06240.1 | Symbols: | F-box family protein |
chr3:1887336-1888619 FORWARD
Length = 427
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 88/335 (26%), Positives = 148/335 (44%), Gaps = 54/335 (16%)
Query: 3 ITTPEEIVADILLKSKVKSLLRFXXXXXXXXXXXXXQDFIKSHL-----HRSQGDLSK-- 55
+ P EI+ +ILL+ KS+ RF F K HL + S L +
Sbjct: 34 LVLPPEIITEILLRLPAKSIGRFRCVSKLFCTLSSDPGFAKIHLDLILRNESVRSLHRKL 93
Query: 56 FVCGSNFY--DVNNSGEAVPVESPLEQQLPFLNGENCTILCS------SDGLVLLRISID 107
V N Y D N+ G+ + + +E P ++ +I D L R +
Sbjct: 94 IVSSHNLYSLDFNSIGDGIRDLAAVEHNYPL--KDDPSIFSEMIRNYVGDHLYDDRRVML 151
Query: 108 KLN---HRKTKAKARAEAYSLV----------LWNPSTRQREVLP---NPKTFA-PYNTF 150
KLN +R+ + + LV L+NP+T + LP PK+ + F
Sbjct: 152 KLNAKSYRRNWVEIVGSSNGLVCISPGEGAVFLYNPTTGDSKRLPENFRPKSVEYERDNF 211
Query: 151 ISYGLGYDSATNCYKVVQ--CGYYRIL---VFSLESYSWRKPKDFGF---DITFSQAGTL 202
+YG G+D T+ YK+V+ IL V+SL++ SWR+ + + D +++ +G
Sbjct: 212 QTYGFGFDGLTDDYKLVKLVATSEDILDASVYSLKADSWRRICNLNYEHNDGSYT-SGVH 270
Query: 203 THGAFHWV-AELDNSSKIVVAFNLSDEKIVQLQLPXXXXXXXXXXXXXXEVIVLQGNLCL 261
+GA HWV E ++ ++VVAF++ E+ ++ +P V L G LC+
Sbjct: 271 FNGAIHWVFTESRHNQRVVVAFDIQTEEFREMPVPDEAEDCSHRFSNFV-VGSLNGRLCV 329
Query: 262 LESIRNICNGGNSPGAYLNIWVMKEYGVTESWNKF 296
+ S ++ + +IWVM EYG +SW++
Sbjct: 330 VNSCYDVHD---------DIWVMSEYGEAKSWSRI 355
>AT3G16210.1 | Symbols: | F-box family protein |
chr3:5494533-5495615 REVERSE
Length = 360
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 103/242 (42%), Gaps = 36/242 (14%)
Query: 6 PEEIVADILLKSKVKSLLRFXXXXXXXXXXXXXQDFIKSHLHRSQGDLSKFVCGSNFYDV 65
PEE+ +IL++ +K L RF F +++ S F NFY +
Sbjct: 6 PEELAIEILVRLSMKDLARFRCVCKTWRDLINDPGFTETYRDMSPAKFVSFY-DKNFYML 64
Query: 66 NNSGEAVPV-----ESPLEQQLPFLNGENCTILCSSDGLVLLRISIDKLNHRKTKAKARA 120
+ G+ PV + PL+Q + ++ C + C V L+ NH
Sbjct: 65 DVEGKH-PVITNKLDFPLDQSM--IDESTCVLHCDGTLCVTLK------NH--------- 106
Query: 121 EAYSLVLWNPSTRQREVLPNPKTFAPYNTFISYGLGYDSATNCYKVV----QCGYYRILV 176
+L++WNP ++Q +++PNP + N G GYD + YKVV + V
Sbjct: 107 ---TLMVWNPFSKQFKIVPNPGIYQDSNIL---GFGYDPVHDDYKVVTFIDRLDVSTAHV 160
Query: 177 FSLESYSWRKPKDFGF-DITF-SQAGTLTHGAFHWVAELDNSSKIVVAFNLSDEKIVQLQ 234
F + SW + + D + + GT +W+A ++ + ++ FNLS + +L
Sbjct: 161 FEFRTGSWGESLRISYPDWHYRDRRGTFLDQYLYWIAYRSSADRFILCFNLSTHEYRKLP 220
Query: 235 LP 236
LP
Sbjct: 221 LP 222
>AT4G21240.1 | Symbols: | F-box family protein |
chr4:11322411-11323664 FORWARD
Length = 417
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 17/134 (12%)
Query: 120 AEAYSLVLWNPSTRQREVLPNPKTFAPYNTFISYGLGYDSATNCYKVVQC-----GYYRI 174
+ Y++V+WNPS RQ LP PK + FI LGYD + YKV+ G +
Sbjct: 139 GDFYNIVVWNPSMRQHVTLPEPKPHSTVRYFIRSCLGYDPVEDKYKVLSISGYHNGNHDP 198
Query: 175 LVFSL-ESYSWR----KPKDFGFDITFSQAGTLTHGAFHWVAELD-------NSSKIVVA 222
LVF+L SWR P D S+ GT +G ++ A++ N I+++
Sbjct: 199 LVFTLGPQESWRVIQNSPLDIPLPTGGSRVGTCINGHVYYEAQIRFKVDDIFNFENILMS 258
Query: 223 FNLSDEKIVQLQLP 236
F++ EK ++ P
Sbjct: 259 FDVRYEKFNTIKKP 272
>AT3G17570.1 | Symbols: | F-box family protein |
chr3:6009413-6010558 FORWARD
Length = 381
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 10/120 (8%)
Query: 125 LVLWNPSTRQREVLPNPKTFAPYNTFISYGLGYDSATNC---YKVVQCGY------YRIL 175
LV+WNP T + +P K+ +PY + + LGYD+ YK+++C + Y
Sbjct: 111 LVVWNPYTGETRWIPY-KSNSPYEMYQKFVLGYDNTNKSRYSYKILRCYHGLIDFGYEFE 169
Query: 176 VFSLESYSWRKPKDFGFDITFSQAGTLTHGAFHWVAELDNSSKIVVAFNLSDEKIVQLQL 235
++ S+SWR+ D + +F G G +W A I++ F+ + E+ +L L
Sbjct: 170 IYEFNSHSWRRFYDNSPNCSFESKGVTLKGNTYWFASDTEGRHIILRFDFATERFGRLSL 229
>AT1G32600.1 | Symbols: | F-box family protein-related |
chr1:11794802-11795683 FORWARD
Length = 293
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 5/130 (3%)
Query: 109 LNHRKTKAKARAEAYSLVLWNPSTRQREVLPNPKTFAPYNTFISYGLGYDSATNCYKVVQ 168
L+ R R + L +W P++ + + +P K N G GYD + YK+V
Sbjct: 46 LSCRGVICLTRKDNNELAIWKPTSTKFKRVPMIKRGQTQNLL---GFGYDRVLDDYKIVT 102
Query: 169 CGYYRILVFSLESYSWRKPKDFGFDITF--SQAGTLTHGAFHWVAELDNSSKIVVAFNLS 226
+ +F+ + SWR+ K F + GT+ +W+A N K ++ F+
Sbjct: 103 IIDKKTYIFTFKESSWRESKLIPSSDCFFKERTGTVVDNCMYWIANRFNKEKFILCFDFV 162
Query: 227 DEKIVQLQLP 236
+E+ +L +P
Sbjct: 163 NEEYSKLNVP 172
>AT1G12170.1 | Symbols: | F-box family protein |
chr1:4128607-4129701 REVERSE
Length = 364
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 102/254 (40%), Gaps = 53/254 (20%)
Query: 1 MEITTPEEIVADILLKSKVKSLLRFXXXXXXXXXXXXXQDFIKSHLHRSQGDLSKFVCGS 60
M + P E+V +IL + SL RF + F+ +HL R + + S
Sbjct: 2 MHVILPWELVEEILYRVPPLSLTRFKIVCKQWNTLFKSKSFVNNHLVRVRPQFLLWT-DS 60
Query: 61 NFYDVN---NSGEAVPV-ESPLEQQLPFLNGENCTILCSSDGLVLLRISIDKLNHRKTKA 116
Y V+ N + + + E PL+ +P+LN T DGL+ D + RK A
Sbjct: 61 KMYSVSVNLNDDQKIDMRELPLD--IPYLNNFMRTYFTPCDGLLFC----DSWSWRKKAA 114
Query: 117 KARAEAYSLVLWNPSTRQREVLPNPKTFAPYNTFISYGLGYDSAT-------------NC 163
+WNP RQ + + ++ TF G+GYDS N
Sbjct: 115 ----------IWNPWLRQTKWI----EYSKEKTFTFRGIGYDSGRPDKGHKIIGSSIYNK 160
Query: 164 YKVVQCGYYR-ILVFSLESYSWRKPKDFGFDITFSQAGTLT-------HGAFHWVAELDN 215
K+++ YR + +++ E+ W+ TFS+ G + +G +WV
Sbjct: 161 RKLIEDPLYRSVEIYTFETNGWKSMN------TFSEEGEIRPLSDVSLNGNLYWVVSNGE 214
Query: 216 SSKIVV-AFNLSDE 228
+ + + +F+ S E
Sbjct: 215 THECFIESFDFSKE 228
>AT3G23880.1 | Symbols: | F-box family protein |
chr3:8622061-8623155 REVERSE
Length = 364
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 74/319 (23%), Positives = 122/319 (38%), Gaps = 63/319 (19%)
Query: 6 PEEIVADILLKSKVKSLLRFXXXXXXXXXXXXXQDFIKSH---LHRSQGDLS-------- 54
P E++ +ILL+ VKSL RF F H L S+ S
Sbjct: 15 PLEMMEEILLRLPVKSLTRFKCVCSSWRSLISETLFALKHALILETSKATTSTKSPYGVI 74
Query: 55 -------KFVCGSNFYDVNNSGEAVPVESPLEQQLPFLNGENCTILCSSDGLVLLRISID 107
K C + Y+ + V V E L + ++ + GLV + D
Sbjct: 75 TTSRYHLKSCCIHSLYNAST----VYVS---EHDGELLGRDYYQVVGTCHGLVCFHVDYD 127
Query: 108 KLNHRKTKAKARAEAYSLVLWNPSTR-QREVLPNPKTFAPYNTFISYGLGYDSATNCYKV 166
K SL LWNP+ + Q+ + + + ++YG GYD + + YKV
Sbjct: 128 K---------------SLYLWNPTIKLQQRLSSSDLETSDDECVVTYGFGYDESEDDYKV 172
Query: 167 VQCGYYR------ILVFSLESYSWRKPKDFGFDITF---SQAGTLTHGAFHWVAELDNSS 217
V R ++S WR F + S++G +G +W A +SS
Sbjct: 173 VALLQQRHQVKIETKIYSTRQKLWRSNTSFPSGVVVADKSRSGIYINGTLNWAATSSSSS 232
Query: 218 KIVVAFNLSDEKIVQLQLPXXXXXXXXXXXXXXEVIVLQGNLCLLESIRNICNGGNSPGA 277
++++++S ++ +L P + G+L S+ C G N+
Sbjct: 233 WTIISYDMSRDEFKELPGPVCCGRGC--------FTMTLGDLRGCLSMVCYCKGANA--- 281
Query: 278 YLNIWVMKEYGVTESWNKF 296
++WVMKE+G SW+K
Sbjct: 282 --DVWVMKEFGEVYSWSKL 298
>AT3G17530.1 | Symbols: | F-box family protein |
chr3:6000860-6002026 FORWARD
Length = 388
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 100/252 (39%), Gaps = 39/252 (15%)
Query: 6 PEEIVADILLKSKVKSLLRFXXXXXXXXXXXXXQDFIKSHLHRSQGDLSKFVCGSNFYD- 64
P ++ ++IL + KSL ++ F+K + ++ G + S Y
Sbjct: 7 PHDLESEILSRVPAKSLAKWKTTCKRWYALFRDPSFVKKNFDKAGGREMIVLMNSRVYSN 66
Query: 65 -VNNSGEAVPVESPLE--QQLPFLN---GENCTILCSSDGLVLLRISIDKLNHRKTKAKA 118
VN G + +E +L LN G + + + DGL+L +
Sbjct: 67 SVNLQGINNRFDPSMEVTGKLIKLNDSKGVDISAIFHCDGLILCTTT------------- 113
Query: 119 RAEAYSLVLWNPSTRQREVLPNPKTFAPYNTFISYGLGY-DSATNC--YKVVQ-CGYY-- 172
E+ LV+WNP T + + P+ F Y Y LGY +S ++C YK+++ C YY
Sbjct: 114 --ESTGLVVWNPCTGEIRCI-KPRIF--YRCNDRYALGYGNSKSSCHSYKILRSCCYYVD 168
Query: 173 --------RILVFSLESYSWRKPKDFGFDITFSQAGTLTHGAFHWVAELDNSSKIVVAFN 224
++ + SWR D D+ +G G +WV+ + F+
Sbjct: 169 QNLSLMAAEFEIYDFSTDSWRDLGDITRDMIVYSSGVSLKGNTYWVSGSKEKGFFMRYFD 228
Query: 225 LSDEKIVQLQLP 236
S E +L LP
Sbjct: 229 FSKEVFGRLPLP 240