Jatropha Genome Database

JcCA0153811.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0153811.20 + phase: 0 /partial
         (245 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G29390.1 | Symbols: RIK | RIK (RS2-Interacting KH protein); R...   243   5e-65

>AT3G29390.1 | Symbols: RIK | RIK (RS2-Interacting KH protein); RNA
           binding | chr3:11289675-11294524 FORWARD
          Length = 578

 Score =  243 bits (621), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 140/253 (55%), Positives = 171/253 (67%), Gaps = 44/253 (17%)

Query: 1   MTEESG-TRVSSDNPTANTDASQSRQRKRRKWDQPAESLVSAGLS--GVVPLGNIGTLAG 57
           MTE++   RV   + +   DAS++RQR++RKWD+PAE LV+AG++   ++PLGN   +  
Sbjct: 1   MTEDNDEARVPLSDSSTTNDASRTRQRRKRKWDKPAEQLVAAGVAFPQLLPLGNTMNVPS 60

Query: 58  ISLPGLASVSGAYLTNQLVASCATVPPVFQVPSAPLNNGVVVSRPNQPKIQDELIIAREI 117
           +S                        P+ Q  S PL     V + NQPKIQDE+IIAREI
Sbjct: 61  MS------------------------PLLQTLSVPL----AVPKVNQPKIQDEVIIAREI 92

Query: 118 VINDAESSVRYKLTKRQTQEEIQKCTGAVVITRGKYRPLNTPPDGEKPLYLHISSGA--H 175
           VINDAE+S+R++LTKR TQE+IQ+ TGAVVITRGKYRP N PPDGEKPLYLHIS+ A   
Sbjct: 93  VINDAEASLRHRLTKRSTQEDIQRSTGAVVITRGKYRPPNAPPDGEKPLYLHISAAAQLQ 152

Query: 176 LKDTAERILAVDRAAAMIEEMLKQSPNLQSAPSIFPIAGGSGL---KALSTCVFLGFDAD 232
           LK+T ERILAVDRAAAMIEEM+KQ        SI  I G  GL   K LSTCV+LGF+AD
Sbjct: 153 LKETTERILAVDRAAAMIEEMMKQK-------SISQI-GSVGLQTVKMLSTCVYLGFEAD 204

Query: 233 SSLNIAARIRGPN 245
            S N+AARIRGPN
Sbjct: 205 PSSNVAARIRGPN 217